PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_018028
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family bHLH
Protein Properties Length: 284aa    MW: 31664.5 Da    PI: 10.1176
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_018028genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.97.6e-135396755
                 HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH  7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                   Er+RR+++N+++  Lr ++P+      +K++Ka+i + A+ YI++Lq
  DCAR_018028 53 VSERNRRKKLNDRLYALRAVVPNI-----TKMDKASIIKDAISYIQELQ 96
                 57*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.1134695IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.39E-1350100No hitNo description
SuperFamilySSF474592.22E-1751113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.8E-1652101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-1653113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.1E-105496IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MESLDEYKLY WETNNYLHTK EQNSFALDET LSAHHNSSSQ DGAQSPGAPK NIVSERNRRK  60
KLNDRLYALR AVVPNITKMD KASIIKDAIS YIQELQEQEK ILGGEITQLE YSLATKNKKS  120
LDELNQAAAD MAMPSTVSKK KRTDKQQLFD ESGSSRVLAS LVPVTELNVS YVGRRTVLVS  180
IKCTNQRNTM VKLCKAFESL KLKSITANIT SSSGILVKTV FIELNVSYVG RRTVLVSIKC  240
TNQRNTMVKL CKAFESLKLK SITANITSFS GILVKTVFIE VKV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-145196954Transcription factor MYC2
5gnj_B2e-145196954Transcription factor MYC2
5gnj_E2e-145196954Transcription factor MYC2
5gnj_F2e-145196954Transcription factor MYC2
5gnj_G2e-145196954Transcription factor MYC2
5gnj_I2e-145196954Transcription factor MYC2
5gnj_M2e-145196954Transcription factor MYC2
5gnj_N2e-145196954Transcription factor MYC2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017250929.11e-153PREDICTED: transcription factor bHLH35-like
SwissprotQ2HIV93e-62BH035_ARATH; Transcription factor bHLH35
TrEMBLA0A161XSX00.0A0A161XSX0_DAUCS; Uncharacterized protein
STRINGXP_007138769.18e-77(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29232451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.47e-67bHLH family protein