PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_018041
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family WRKY
Protein Properties Length: 319aa    MW: 35691.9 Da    PI: 6.7542
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_018041genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY77.41.6e-24122182259
                  --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                  +Dgy+WrKYGqK + +s++pr Y+rCt++   gC++ k+v++ ++d+++ +itY g+H+++
  DCAR_018041 122 EDGYSWRKYGQKGILNSKYPRCYFRCTYKheqGCQALKQVQQLEDDKRMYNITYFGQHTCK 182
                  8***************************98999**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.6E-24113183IPR003657WRKY domain
PROSITE profilePS5081120.036116179IPR003657WRKY domain
SuperFamilySSF1182902.22E-23120183IPR003657WRKY domain
SMARTSM007746.3E-37121183IPR003657WRKY domain
PfamPF031068.9E-24122182IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009862Biological Processsystemic acquired resistance, salicylic acid mediated signaling pathway
GO:0009864Biological Processinduced systemic resistance, jasmonic acid mediated signaling pathway
GO:0010200Biological Processresponse to chitin
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MAATSPEHSW GTKRKRVIKE LVQGRDIATQ LQDLLLLGNN CSSDHGVQEL AMKICTSFSQ  60
SLSVLNSCAQ IHGSDFGSAS SGLLASQDSG ESVNRSTSKS RRGCYKRRKT LDSRRSVSSK  120
LEDGYSWRKY GQKGILNSKY PRCYFRCTYK HEQGCQALKQ VQQLEDDKRM YNITYFGQHT  180
CKKSTDIMKA AQTTPEPNSL LNTCSLYDME PKLSQNENKE EPSDDQLFTD PLLDSDISWQ  240
DNVKGLRLSD KPPMFLFSEL GTDNLENRVD TSAGYLCGSP NSYGLDAGMD MSLIRSLQFD  300
NWDFHCDQIL SSELQAGS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-20117182469OsWRKY45
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00408DAPTransfer from AT3G56400Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017249298.10.0PREDICTED: probable WRKY transcription factor 70
TrEMBLA0A161YMB80.0A0A161YMB8_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA61992233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.12e-43WRKY DNA-binding protein 70