PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_018151
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family C3H
Protein Properties Length: 369aa    MW: 39915.2 Da    PI: 7.6297
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_018151genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.81.4e-064867626
                 -SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH  6 CrffartGtCkyGdrCkFaHg 26
                 C+f+ + G Ck+Gd CkF H+
  DCAR_018151 48 CNFWIQ-GNCKFGDGCKFKHS 67
                 ******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902293.14E-64367IPR000571Zinc finger, CCCH-type
SMARTSM003568.1E-44468IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.9E-54767IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.1224769IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:2.130.10.102.2E-4468359IPR015943WD40/YVTN repeat-like-containing domain
SuperFamilySSF509782.75E-4669120IPR017986WD40-repeat-containing domain
SMARTSM003201.3E-572111IPR001680WD40 repeat
PfamPF004009.4E-475111IPR001680WD40 repeat
PROSITE profilePS5008213.48379120IPR001680WD40 repeat
PROSITE profilePS5029420.75179328IPR017986WD40-repeat-containing domain
PROSITE patternPS00678098112IPR019775WD40 repeat, conserved site
PRINTSPR003202.3E-698112IPR020472G-protein beta WD-40 repeat
SMARTSM0032022151188IPR001680WD40 repeat
SuperFamilySSF509782.75E-46158362IPR017986WD40-repeat-containing domain
SMARTSM003200.0014195232IPR001680WD40 repeat
PfamPF004000.003199232IPR001680WD40 repeat
PROSITE profilePS5008212.38202241IPR001680WD40 repeat
PRINTSPR003202.3E-6219233IPR020472G-protein beta WD-40 repeat
SMARTSM003204.5E-4235272IPR001680WD40 repeat
PfamPF004009.3E-4237271IPR001680WD40 repeat
PRINTSPR003202.3E-6259273IPR020472G-protein beta WD-40 repeat
SMARTSM0032015276319IPR001680WD40 repeat
SMARTSM003202.8322359IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MSNSNAASSK RPAGFTNDHS KVPRRNTNFN NKWGRVHGRA AKKMDGVCNF WIQGNCKFGD  60
GCKFKHSWCT GPFSLLTQLQ GHTKVISGIT LPSGSDKLYT GSKDETVRVW DCQSGQCAGV  120
TNIAGEVGCM LNEGPWIFVG LPNGVKAWNA QTATDLSLNA PGGQVYAFVV GNDLLFAGAQ  180
DGTIFAWKYN VSMNSFEPAA SLKGHSSAVV TLVVGANKVY SGSMDTTIRV WSLETLQCVQ  240
TLTEHSSVVM SVLCWDQFLL SCSLDKTIKV WFAAESGNLE VTYTHSEEHG LLALCGMLDA  300
ESKPVLMCSS NDNSIRVYDL PSFSERGRIY SKQEIRSIQI GPGGLFFTGD GAGEVRVWKW  360
LTEATSTA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A1e-21763588323Tako8
6g6n_A1e-21763588323Tako8
6g6n_B1e-21763588323Tako8
6g6n_C1e-21763588323Tako8
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017253001.10.0PREDICTED: zinc finger CCCH domain-containing protein 63
SwissprotQ9FNZ11e-179C3H63_ARATH; Zinc finger CCCH domain-containing protein 63
TrEMBLA0A161YMJ30.0A0A161YMJ3_DAUCS; Uncharacterized protein
STRINGVIT_16s0100g00320.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28842134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51980.10.0C3H family protein