PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_018222

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

LBD

Protein Properties

Length: 166aa MW: 18666.4 Da PI: 6.8941

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_018222	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	87.8	1.4e-27	6	93	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +Ca+Ck+lrr+CakdC++apyfp ++p+kfa+vhk ++p e+r da+sslv+eA+ar+rdPvyG+vg i+ lq q++ql+ +la+++ DCAR_018222 6 PCASCKLLRRRCAKDCIFAPYFPPHDPHKFAIVHK------------EIPVEQRGDAVSSLVFEANARLRDPVYGCVGAISYLQTQVSQLQMQLAVAE 91 7******************************97............89********************************************998 PP DUF260 99 ee 100 +e DCAR_018222 92 AE 93 76 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	15.246	5	94	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	8.7E-27	6	91	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 166 aa Download sequence Send to blast
MVGASPCASC KLLRRRCAKD CIFAPYFPPH DPHKFAIVHK EIPVEQRGDA VSSLVFEANA 60 RLRDPVYGCV GAISYLQTQV SQLQMQLAVA EAEILCLQMQ QQQQQQSQQP NIPITAQQMM 120 MIPDDKSLHL STNNFDYSLQ QQYLNFGPTS NIVMQDPPKR ESLWT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	7e-35	4	95	9	112	LOB family transfactor Ramosa2.1
5ly0_B	7e-35	4	95	9	112	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017251845.1	1e-108	PREDICTED: LOB domain-containing protein 12
Swissprot	Q8LBW3	7e-61	LBD12_ARATH; LOB domain-containing protein 12
TrEMBL	A0A162A428	1e-119	A0A162A428_DAUCS; Uncharacterized protein
STRING	POPTR_0001s28840.1	5e-71	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	1e-59	LBD family protein

Link Out ? help Back to Top
Phytozome	DCAR_018222

Publications ? help Back to Top
Penfield S, et al. Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1. Plant Cell, 2004. 16(10): p. 2705-18 [PMID:15367715]