PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_018294
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family WRKY
Protein Properties Length: 219aa    MW: 25246.8 Da    PI: 4.5679
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_018294genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.73.3e-302684259
                 --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY  2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59
                 +D ++WrKYGqK++kgs++pr+YYrC+++ gC +kk+ver+++d ++++itY+++Hnh+
  DCAR_018294 26 SDAWTWRKYGQKPIKGSPYPRGYYRCSTSkGCLAKKQVERCRTDASLLIITYTSSHNHS 84
                 69************************9988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.4E-311685IPR003657WRKY domain
PROSITE profilePS5081129.8612086IPR003657WRKY domain
SuperFamilySSF1182901.96E-252385IPR003657WRKY domain
SMARTSM007742.2E-352585IPR003657WRKY domain
PfamPF031061.2E-242783IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MSEKTVVTVK IEENENKKHK SEGPPSDAWT WRKYGQKPIK GSPYPRGYYR CSTSKGCLAK  60
KQVERCRTDA SLLIITYTSS HNHSSTKELK QQKEEQEEEP KVETTEDNNN LEKEDEDGAS  120
EITSNFHYIH SPVKGSDHQD IIANIELEEE IQFTENLENV LFDEEDKPLS YPHLMTFTTH  180
KSEENDFYDE LGELPTSSSF TSFMWGNFFE DRILIPLP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B2e-1926831776Disease resistance protein RRS1
5w3x_D2e-1926831776Disease resistance protein RRS1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017250159.11e-162PREDICTED: probable WRKY transcription factor 65
TrEMBLA0A162A2881e-160A0A162A288_DAUCS; Uncharacterized protein
STRINGVIT_07s0005g01520.t012e-74(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA112812025
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29280.11e-36WRKY DNA-binding protein 65