PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_018316
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family ERF
Protein Properties Length: 230aa    MW: 26873.9 Da    PI: 5.4421
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_018316genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.34.5e-1978126355
          AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  y+G+r+++ +g+W+AeIrdp++     r++lg++ taeeAa+a+++ ++k++g
  DCAR_018316  78 YRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTYNTAEEAARAYDREARKIRG 126
                  9*******.**********954...4************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.74977134IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.2E-3277135IPR001471AP2/ERF domain
SMARTSM003801.2E-3877140IPR001471AP2/ERF domain
SuperFamilySSF541711.83E-2277135IPR016177DNA-binding domain
PRINTSPR003671.1E-117889IPR001471AP2/ERF domain
PfamPF008473.0E-1278126IPR001471AP2/ERF domain
CDDcd000188.14E-3378135No hitNo description
PRINTSPR003671.1E-11100116IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MCGGAILRDL IPRNISRRVS SADIWPSSSS TTKLDDFDSD FNDFCQEQPH YTLKRSHHPY  60
TGEEHHENTV KKQRKNLYRG IRQRPWGKWA AEIRDPRKGV RVWLGTYNTA EEAARAYDRE  120
ARKIRGKKAK VNFPNEDTND HEVHFSDSNK KFTPELKQEV KEEESVESNH KEELDEVKKL  180
SEELMAYEVY MKFYDIPYLD GTVEAQVNEV QEVVVDCELM NLWSFDDVV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-2278134360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A1e-2278134663ATERF1
3gcc_A1e-2278134663ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017250000.11e-173PREDICTED: ethylene-responsive transcription factor ERF071-like
TrEMBLA0A164YZ001e-171A0A164YZ00_DAUCS; Uncharacterized protein
STRINGXP_009608570.14e-75(Nicotiana tomentosiformis)
STRINGXP_010107742.17e-75(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA71182329
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47520.12e-37ERF family protein