PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_018423
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family ERF
Protein Properties Length: 236aa    MW: 26412.4 Da    PI: 7.2134
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_018423genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.52.1e-1589139255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  +y+GVr++  +g+++AeIr+p +   +  r +lg++  +e+Aa a+++a+  ++g
  DCAR_018423  89 RYRGVRRRA-WGKYAAEIRHPIK---KgSRLWLGTYHNPEDAALAYDRAAYLIRG 139
                  8*****777.**********744...24**********************98887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.59E-2888149No hitNo description
SuperFamilySSF541717.19E-2189148IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.8E-2989148IPR001471AP2/ERF domain
PROSITE profilePS5103222.44589147IPR001471AP2/ERF domain
PfamPF008471.2E-889139IPR001471AP2/ERF domain
SMARTSM003809.8E-3289153IPR001471AP2/ERF domain
PRINTSPR003671.7E-1190101IPR001471AP2/ERF domain
PRINTSPR003671.7E-11129149IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MSKQTNLSEY EISCLQSIEQ FLLNDNSEFS EEIISSHNSA AGSSCVEEYF MKDMQNLISE  60
EDGPNKRVEK DVKDTTSSSS TVVAAASKRY RGVRRRAWGK YAAEIRHPIK KGSRLWLGTY  120
HNPEDAALAY DRAAYLIRGS RATVNFPHLI RRSLFLDYAQ QINYKKPIKR VFHEPPPSHT  180
SPLASSSASS FILNNSSPLD QELSSLHDFS STSWSNDNGL LNDIILGAQA NKDQF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-2585147163ATERF1
3gcc_A2e-2585147163ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017251006.11e-175PREDICTED: ethylene-responsive transcription factor 11-like
TrEMBLA0A164Z1L21e-174A0A164Z1L2_DAUCS; Uncharacterized protein
STRINGXP_009798818.17e-37(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.11e-19ethylene-responsive element binding factor 13