PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_018466
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family C2H2
Protein Properties Length: 148aa    MW: 16569.3 Da    PI: 6.2346
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_018466genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.10.000143355123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 y+C  C++ F++   L  H++ H
  DCAR_018466 33 YECVFCKRGFTTAQALGGHMNIH 55
                 99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.1E-43059IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.12E-63160No hitNo description
PROSITE profilePS5015711.0743360IPR007087Zinc finger, C2H2
PROSITE patternPS0002803555IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MESKYHQEDS TNSSSGEESD QVELHNSGLS RSYECVFCKR GFTTAQALGG HMNIHRKDKA  60
KTRPCKDNKQ QQDSYNGKVP AIFPVSTSLC SHDQNPLPGI EDYQLGLGLS LQFRTSKFRQ  120
EVLEDKRRGG LVEDDDLDLE LRLGHNP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017251021.11e-107PREDICTED: transcriptional regulator SUPERMAN-like
TrEMBLA0A164Z2H51e-105A0A164Z2H5_DAUCS; Uncharacterized protein
STRINGPOPTR_0002s04250.15e-26(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21362152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53820.15e-14C2H2 family protein