PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_018468
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family LBD
Protein Properties Length: 241aa    MW: 26441.1 Da    PI: 6.3794
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_018468genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260125.72.2e-3971071100
       DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 
                  +C aCk+lrrkC ++Cv+apyf++eq +++fa++hk+FGasnv+kll++lp ++r++a+ +++yeA ar++dP+yG+v++i++lqqq+ +l+++la+l
  DCAR_018468   7 PCGACKFLRRKCMRGCVFAPYFCHEQgASHFAAIHKVFGASNVSKLLAHLPVSDRSEAAVTIAYEALARIQDPIYGCVSHIFALQQQVVNLQVQLASL 104
                  7*************************89********************************************************************99 PP

       DUF260  98 kee 100
                  +e+
  DCAR_018468 105 REQ 107
                  987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.2816108IPR004883Lateral organ boundaries, LOB
PfamPF031953.5E-377105IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MTGTGSPCGA CKFLRRKCMR GCVFAPYFCH EQGASHFAAI HKVFGASNVS KLLAHLPVSD  60
RSEAAVTIAY EALARIQDPI YGCVSHIFAL QQQVVNLQVQ LASLREQASQ SFGKGSGSSG  120
NPNYDTTANH GKFNPFDSPN DFQNWFQSEN ASMISPFDHR NSSRNIAADH FMVNPNSASG  180
HYENSAIPQH EDASFSSLED QGSTHTMDSV EDMQTSHCQW TFRDDLHDLQ SAALGYIHQY  240
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A7e-3631017104LOB family transfactor Ramosa2.1
5ly0_B7e-3631017104LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. {ECO:0000269|PubMed:15659631}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017252043.10.0PREDICTED: LOB domain-containing protein 29-like
SwissprotQ9SLB65e-65LBD17_ARATH; LOB domain-containing protein 17
TrEMBLA0A161XU030.0A0A161XU03_DAUCS; Uncharacterized protein
STRINGVIT_07s0005g03020.t018e-91(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA84462230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58190.12e-55lateral organ boundaries-domain 29
Publications ? help Back to Top
  1. Xu C, et al.
    Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration.
    Nat Plants, 2018. 4(2): p. 108-115
    [PMID:29358751]