PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_018481
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB
Protein Properties Length: 255aa    MW: 28896.8 Da    PI: 5.0268
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_018481genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.94.3e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT +Ed++l++ v+++G ++W++ ++  g+ R++k+c++rw +yl
      DCAR_018481 14 KGPWTRDEDQILINHVTLHGHDNWRALPKQAGLLRCGKSCRLRWTNYL 61
                     79******************************99************97 PP
2Myb_DNA-binding51.52.4e-1667112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++++eE+e ++++++ lG++ W++Ia+ ++ gRt++++k+ w+++l
      DCAR_018481  67 RGNFSQEEEETIINLHEVLGNR-WSAIAASLP-GRTDNEIKNVWHTHL 112
                      89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.5E-25564IPR009057Homeodomain-like
PROSITE profilePS5129416.253961IPR017930Myb domain
SuperFamilySSF466891.61E-2910108IPR009057Homeodomain-like
SMARTSM007173.1E-131363IPR001005SANT/Myb domain
PfamPF002497.3E-151461IPR001005SANT/Myb domain
CDDcd001671.16E-101661No hitNo description
PROSITE profilePS5129424.862116IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.1E-2665116IPR009057Homeodomain-like
SMARTSM007175.6E-1466114IPR001005SANT/Myb domain
PfamPF002499.3E-1567112IPR001005SANT/Myb domain
CDDcd001671.76E-1069112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MVRAPCCEKM GLKKGPWTRD EDQILINHVT LHGHDNWRAL PKQAGLLRCG KSCRLRWTNY  60
LRPDIKRGNF SQEEEETIIN LHEVLGNRWS AIAASLPGRT DNEIKNVWHT HLKKRINKVP  120
KTTAPTSHNA EQSSDLKFTS PSRFQVKDDI SQQNSPQQQS SMTTSSAEDN TSAEPLTDFL  180
EVDDSFWSEV FSSENSSDTS EFLADNGGTA TSGFNGDDFH LQFPEFDNDH MNRDIMDNFW  240
YDMLTNSSGP LPEF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-27121175109B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that regulates freezing tolerance by affecting expression of CBF genes. {ECO:0000269|PubMed:24415840}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA), jasmonic acid (JA), salt (NaCl), ethylene and auxin (IAA) (PubMed:16463103). Down-regulated by cold treatment (PubMed:24415840). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:24415840}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017249906.10.0PREDICTED: myb-related protein Myb4-like
SwissprotQ9SJX87e-79MYB14_ARATH; Transcription factor MYB14
TrEMBLA0A161YN770.0A0A161YN77_DAUCS; Uncharacterized protein
STRINGPOPTR_0005s24550.14e-86(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.11e-77myb domain protein 14
Publications ? help Back to Top
  1. Chen Y, et al.
    AtMYB14 Regulates Cold Tolerance in Arabidopsis.
    Plant Mol. Biol. Rep., 2013. 31: p. 87-97
    [PMID:24415840]