PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_018621
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family B3
Protein Properties Length: 453aa    MW: 51175.2 Da    PI: 7.2963
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_018621genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B334.24.5e-11218304797
                  .-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
           B3   7 psdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                  +s+ lk++   + +++a +    +++ +s+tl +++    sW v+l++++++   ++ + W +F++a +LkegD++ F+l+g   ++++v v+
  DCAR_018621 218 SSHLLKKDHTKILNRYACKQlgLLEEMKSVTLFFKN---MSWVVNLKWDNGK--AYMDRTWYDFARASRLKEGDICAFMLSG-PPGKFRVCVY 304
                  566666666666666654555645556777777777...9******887776..789***********************99.5555577665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.35E-10206306IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.0025212307IPR003340B3 DNA binding domain
PROSITE profilePS5086310.546212307IPR003340B3 DNA binding domain
PfamPF023623.8E-8218303IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.5E-9219306IPR015300DNA-binding pseudobarrel domain
CDDcd100175.14E-8235304No hitNo description
SuperFamilySSF1019369.42E-12321415IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.2E-9324415IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508637.486325415IPR003340B3 DNA binding domain
SMARTSM010190.0041326415IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MCTASGCSPY ILSVAAPAIL QHVHSHNCLG NKTLQFLLIL HLDLYWQLLF ASSAWRVLLR  60
VNFNMKWGER GSTFVCPNFG SDYIAGILIL PKEFPIENSG PIPERLLLHV APGVVWNGKY  120
SVERNWIEGL EKMMLYYCIK PYYLIAMEYI GGPSFNLQIY NPYGVEVNYT VTDKSETLSS  180
MDRSFFNFSD IEVDKLCGTM FSNVYNSGLH VYDLLISSSH LLKKDHTKIL NRYACKQLGL  240
LEEMKSVTLF FKNMSWVVNL KWDNGKAYMD RTWYDFARAS RLKEGDICAF MLSGPPGKFR  300
VCVYEPDLLT KCNEKGIGHA SKVTNWFKIV NDVVLYAGQM EIPRVFMEMN GGVLEETVNL  360
IMGDGRSVAV NFSRSQSFLH GLKTLVDTYS IKLNDVMVFH FLSDSTFAVS LFKATGMEYK  420
LNSRHDAATK KTGGIREEEI IILSDSSGEG SL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A161YNH90.0A0A161YNH9_DAUCS; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01580.12e-06B3 family protein