PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_018698

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

Trihelix

Protein Properties

Length: 220aa MW: 26334.1 Da PI: 8.2959

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_018698	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	51.4	2.9e-16	2	61	23	85
trihelix 23 rgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 ++k++k lWe + km+e g++rsp qCk+kw+nl +ryk ++++ +++ ++++++++++ DCAR_018698 2 ETKRNKLLWELLATKMKELGYNRSPDQCKCKWKNLVTRYKGCETMGSEE---MKQQFSFYSEV 61 56889***************************************99984...45578888876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd12203	1.87E-14	2	44	No hit	No description
Pfam	PF13837	2.9E-14	3	63	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 220 aa Download sequence Send to blast
METKRNKLLW ELLATKMKEL GYNRSPDQCK CKWKNLVTRY KGCETMGSEE MKQQFSFYSE 60 VQSIFGARME RMIWMEADDG AGGSKQKVTL LSSDEEDENE DSDLGDKKAA KSSKKRKVKC 120 STSTTNNSNV KEILDDFMKQ QKEMEMRWFK AMEAREQERK MRELEWRQRL EALETEKMMM 180 ETKWREREEE WRMREEARAQ KRDALMDTLL QKLLREDRN*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specifically to the core DNA sequence 5'-GTTAC-3'. {ECO:0000269\|PubMed:15044016}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017248751.1	1e-155	PREDICTED: trihelix transcription factor GT-3b-like
Swissprot	Q9SDW0	3e-43	TGT3A_ARATH; Trihelix transcription factor GT-3a
TrEMBL	A0A161XUJ6	1e-154	A0A161XUJ6_DAUCS; Uncharacterized protein
STRING	XP_004506754.1	6e-75	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4187	23	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G01380.1	8e-35	Trihelix family protein

Link Out ? help Back to Top
Phytozome	DCAR_018698