PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_018724
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB
Protein Properties Length: 298aa    MW: 33671.7 Da    PI: 8.8632
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_018724genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.41.9e-092368346
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                     +WT+eE +++ +a +++ ++   +W  +a++++ g+t ++++  ++ 
      DCAR_018724 23 KWTPEENKQFENALALFDKDtpdRWYNVAAMIP-GKTVNDVIKQYRE 68
                     8********************************.********99986 PP
2Myb_DNA-binding44.63.3e-14131175347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ +++ + k++G+g+W+ I+r + + Rt+ q+ s+ qky
      DCAR_018724 131 PWTEEEHRQFLLGLKKYGKGDWRNISRNFVTSRTPTQVASHAQKY 175
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.9E-51869IPR009057Homeodomain-like
PROSITE profilePS512938.921974IPR017884SANT domain
SMARTSM007171.7E-102072IPR001005SANT/Myb domain
SuperFamilySSF466894.52E-122277IPR009057Homeodomain-like
CDDcd001676.69E-82369No hitNo description
PfamPF002492.0E-82368IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-12122180IPR009057Homeodomain-like
PROSITE profilePS5129419.875124180IPR017930Myb domain
SuperFamilySSF466893.01E-17126179IPR009057Homeodomain-like
TIGRFAMsTIGR015576.8E-18127179IPR006447Myb domain, plants
SMARTSM007176.0E-13128178IPR001005SANT/Myb domain
CDDcd001678.39E-11131176No hitNo description
PfamPF002491.7E-11131175IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MNQGMGILSR ANSNWFFEIK ETKWTPEENK QFENALALFD KDTPDRWYNV AAMIPGKTVN  60
DVIKQYRELE EDVSVIEAGL IPVPGYASDH SFELEWINNQ GFDGLKQFYV PGGKRNSSGR  120
VCDQERKKGV PWTEEEHRQF LLGLKKYGKG DWRNISRNFV TSRTPTQVAS HAQKYFIRQL  180
SGGKDKRRSS IHDITTVNLI DPKSASSINI KPPFPDKIIA AMQQPQQHSS RTGMEKALYG  240
WNMQNEESIM AFNMSSSTKT GNLYGNSTHD QPTQEQNLPG NFLQGPQPGL NSAIPWA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A6e-1624861173RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00296DAPTransfer from AT2G38090Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ1480609e-99FJ148060.1 Daucus carota subsp. sativus clone BAC C144G02 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017249404.10.0PREDICTED: transcription factor DIVARICATA-like
SwissprotQ8S9H71e-106DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A162A3580.0A0A162A358_DAUCS; Uncharacterized protein
STRINGPOPTR_0016s11980.11e-128(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45824140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.11e-103MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]