PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_018916
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family ARR-B
Protein Properties Length: 540aa    MW: 59389.1 Da    PI: 6.3847
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_018916genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like78.49.2e-25192245155
      G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                  k r  Wt+eLH++Fveav++L  ++kA+Pk+i+++mk +gLt+e v+SHLQkYR 
  DCAR_018916 192 KRRFAWTQELHQKFVEAVHHL-NADKAVPKQIVDIMKEPGLTREIVASHLQKYRN 245
                  6799*****************.9*******************************6 PP
2Response_reg80.74.8e-27291371109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   vl+vdD+p+ ++ +  +l+k +y +v+ ++ ++eal+ll++++  +Dl+++D++mp+mdG+ellk i  e  ++p+i+++  ++ e + + +  Ga+
   DCAR_018916  29 VLLVDDDPTSLKTVSAMLQKCKY-RVTPVTIATEALALLRANKddYDLVMTDVRMPDMDGFELLKIIGLEM-DIPVIMMSVDDKRENVMKGVMHGAR 123
                   89*********************.***************777667**********************6644.8************************ PP

                   EEEESS--HHHHHH CS
  Response_reg  96 dflsKpfdpeelvk 109
                   d+l+Kp+ + el +
   DCAR_018916 124 DYLVKPIRILELQN 137
                   *******9988865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521726.69E-3425151IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23001.0E-3926160No hitNo description
SMARTSM004484.9E-2927139IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011041.76128143IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.0E-2229137IPR001789Signal transduction response regulator, receiver domain
CDDcd001567.86E-3030143No hitNo description
PROSITE profilePS5129410.475189248IPR017930Myb domain
SuperFamilySSF466892.51E-16190249IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.6E-25191249IPR009057Homeodomain-like
TIGRFAMsTIGR015578.0E-22192245IPR006447Myb domain, plants
PfamPF002491.3E-5196244IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 540 aa     Download sequence    Send to blast
MSENNTSENS AGDGTPMPEN PKFPEGLRVL LVDDDPTSLK TVSAMLQKCK YRVTPVTIAT  60
EALALLRANK DDYDLVMTDV RMPDMDGFEL LKIIGLEMDI PVIMMSVDDK RENVMKGVMH  120
GARDYLVKPI RILELQNIWQ HVLRKTALDP EKSSLITEEI VVGNLPLKKR QGKDKEKEDA  180
NAISDGSCSM KKRRFAWTQE LHQKFVEAVH HLNADKAVPK QIVDIMKEPG LTREIVASHL  240
QKYRNYLKRE QMRMTESGVY NNGQKGIHEA YLNPTPTSYS DYRPILRDPN NGCSSGSGTT  300
SFRDHLPKPE ALTNSQLNDS FMIGSLNQQS LWSQQTYNPP HMPNQVQAPK PTSVLGNIPL  360
AQAQQWVANP PGRVMFGDYV NMSSQIPNFG TVQAGPQLGF ANFAGQSGFP PSKLPSTENA  420
LHPGPSGAFG IVGAPYQMLD GASNQISQPF QRNVLPGQHN GNVISTAFSG GVGSDCRGYP  480
VDFGDMDKPR VNGQGGQGAY MQLLTEKMDN NYHNSLSSID DELSTEGEQI APTSSAPMK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A5e-16189249262ARR10-B
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017251095.10.0PREDICTED: two-component response regulator ARR12-like
TrEMBLA0A164ZBM20.0A0A164ZBM2_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1548956
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.12e-73response regulator 2