PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_018960
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB_related
Protein Properties Length: 349aa    MW: 38683.1 Da    PI: 7.2654
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_018960genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.56.2e-18111157148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT eEd +l+++v+q+G + W+ Ia +++ gR +kqc++rw+++l
      DCAR_018960 111 KGQWTDEEDRKLIRLVNQFGVRKWAQIAGKIP-GRAGKQCRERWHNHL 157
                      799*****************************.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129427.527106161IPR017930Myb domain
SuperFamilySSF466892.83E-18107164IPR009057Homeodomain-like
SMARTSM007171.1E-16110159IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-23110160IPR009057Homeodomain-like
PfamPF002491.3E-16111157IPR001005SANT/Myb domain
CDDcd001673.05E-16114157No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MERGGRVLGY GISAKNMSSP PISAIDRFLF GQKNKKIVVS RESHHEFYSN PYPSSYGSFL  60
GNDVCDYGTT GGEAGMGSFH TISFMDGIQS GLDSEDKARG GSGDFSTHLI KGQWTDEEDR  120
KLIRLVNQFG VRKWAQIAGK IPGRAGKQCR ERWHNHLRPD IKNSRRKNKK NGTKNGKLRP  180
SPLQEYIKAT SSQEPPNNNS ANSYHSTTVS KPNPSMSSTS VSKGSLLSIM DLAVPQSPSE  240
DSTCIITETC DEELKFMQSL FATESESSGN DNKEMKMVHD AIMSKDERPD LMMRPDHYLA  300
SLWASEITSS ASTNAAYDQG CNNEYEDLTQ LKKEMDLIEM VSSYRNSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-18109164560B-MYB
1gvd_A2e-18109160152MYB PROTO-ONCOGENE PROTEIN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017251105.10.0PREDICTED: protein ODORANT1
TrEMBLA0A164ZCJ20.0A0A164ZCJ2_DAUCS; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58850.13e-30myb domain protein 119