PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_019109
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family Whirly
Protein Properties Length: 101aa    MW: 10984.6 Da    PI: 8.5095
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_019109genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly139.71.3e-4319935139
       Whirly  35 llelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalkvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefa 132
                  +l + +a++erkydWekkq fals+te+++l++l++ e+ceffhdp++k+sn+G+vrk+l+v+P++dGsG+  n      ++k  e+++vPv+kaefa
  DCAR_019109   1 MLSFSPAIGERKYDWEKKQLFALSPTEIGSLISLGPDEACEFFHDPSMKTSNAGQVRKTLQVKPHADGSGVVNN------VQKISERVTVPVTKAEFA 92 
                  799*******************************************************************7544......467789************ PP

       Whirly 133 vlrsllv 139
                  v+r++++
  DCAR_019109  93 VMRTAFS 99 
                  ****995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF085363.0E-39197IPR013742Plant transcription factor
SuperFamilySSF544473.53E-35199IPR009044ssDNA-binding transcriptional regulator
Gene3DG3DSA:2.30.31.101.6E-39199IPR009044ssDNA-binding transcriptional regulator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 101 aa     Download sequence    Send to blast
MLSFSPAIGE RKYDWEKKQL FALSPTEIGS LISLGPDEAC EFFHDPSMKT SNAGQVRKTL  60
QVKPHADGSG VVNNVQKISE RVTVPVTKAE FAVMRTAFSV *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4kop_A2e-4819950154Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_B2e-4819950154Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_C2e-4819950154Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_D2e-4819950154Single-stranded DNA-binding protein WHY2, mitochondrial
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtSingle-stranded DNA-binding protein that associates with mitochondrial DNA and may play a role in the regulation of the gene expression machinery. Seems also to be required to prevent break-induced DNA rearrangements in the mitochondrial genome. Can bind to melt double-stranded DNA in vivo. {ECO:0000269|PubMed:18423020, ECO:0000269|PubMed:20551348, ECO:0000269|PubMed:22762281}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017249281.12e-65PREDICTED: single-stranded DNA-bindig protein WHY2, mitochondrial-like isoform X1
SwissprotQ8VYF72e-47WHY2_ARATH; Single-stranded DNA-binding protein WHY2, mitochondrial
TrEMBLA0A164ZFT71e-68A0A164ZFT7_DAUCS; Uncharacterized protein
STRINGXP_009366880.15e-48(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA97822228
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71260.19e-50WHIRLY 2