PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_019120
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family NF-YB
Protein Properties Length: 95aa    MW: 10318.6 Da    PI: 8.6822
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_019120genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB803.2e-258574695
        NF-YB 46 vtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95
                 + + asdkcq+ekrktingddllwa+atlGfedy++plk+yl++yre ++
  DCAR_019120  8 ILCRASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKAYLARYREGDT 57
                 6789******************************************9665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.4E-21877IPR009072Histone-fold
PfamPF008089.0E-6833IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF471133.31E-17866IPR009072Histone-fold
PRINTSPR006152.7E-101634No hitNo description
PRINTSPR006152.7E-103553No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 95 aa     Download sequence    Send to blast
MEVSKGVILC RASDKCQKEK RKTINGDDLL WAMATLGFED YIDPLKAYLA RYREGDTKGS  60
ARGGEGSAKK DPIGSQLSSQ QYAHQGMGYV NSQV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_B9e-176544694NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A9e-176544694NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017252060.19e-63PREDICTED: nuclear transcription factor Y subunit B-8-like
RefseqXP_017252061.19e-63PREDICTED: nuclear transcription factor Y subunit B-8-like
SwissprotQ67XJ21e-33NFYBA_ARATH; Nuclear transcription factor Y subunit B-10
TrEMBLA0A164ZG442e-63A0A164ZG44_DAUCS; Uncharacterized protein
STRINGVIT_13s0019g03600.t012e-40(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53340.16e-36nuclear factor Y, subunit B10
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]