PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_019127
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family B3
Protein Properties Length: 383aa    MW: 44055.6 Da    PI: 5.5127
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_019127genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.77.8e-1718107198
                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                  f+k +++s+v+   +l lpk+f+ +h   +e++  ++l de+g + e ++ ++k++    l++GW++F  +++L+egD+++F+l+++ +f  +v ++r
  DCAR_019127  18 FVKYMLRSHVTGGFWLGLPKNFTCNHL--PEKNDIVVLVDETGVEHETNYLWEKNG----LSGGWRKFSLDHQLREGDVLIFHLIDECKF--KVYIVR 107
                  8999******************97773..345568***************999999....*************************98888..777765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.96E-2312108IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.8E-1912108IPR015300DNA-binding pseudobarrel domain
CDDcd100171.00E-2416107No hitNo description
PROSITE profilePS5086311.98418109IPR003340B3 DNA binding domain
SMARTSM010194.1E-1818109IPR003340B3 DNA binding domain
PfamPF023623.6E-1418107IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MERAREIQAN LPSRFPSFVK YMLRSHVTGG FWLGLPKNFT CNHLPEKNDI VVLVDETGVE  60
HETNYLWEKN GLSGGWRKFS LDHQLREGDV LIFHLIDECK FKVYIVRVKS EALIETDIDL  120
SLVNLGARAT EMVGDYQERD PKITVLAREE HLEQYPEKDM VALLNDEDAA ENYFEMDVDD  180
YDSGIRFSQP VIDFKDVKTF SHFNIIVYGF SIDHRISQHL RVKYYELCCS QKSYLHDQLK  240
DGLNLQLVVG VISETISIAD AIRSSMPTSS ENLISWDKIL EGFEILGMKV GFLRARINKL  300
VTISSDAKDA LERKILEKVN AEEELRALIL EKVKAEKEVK ALQIKLIDVK KVIANSDHKI  360
EYMKKRAERL EAVFLQESKA PW*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017251713.10.0PREDICTED: B3 domain-containing protein Os01g0234100-like
TrEMBLA0A164ZGA10.0A0A164ZGA1_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30232343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.12e-39B3 family protein