PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_019140
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family NF-YB
Protein Properties Length: 173aa    MW: 19554.4 Da    PI: 7.3833
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_019140genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB122.61.6e-381698292
        NF-YB  2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyre 92
                 re+dr++Pian+srimkk +Pan+kiskdak+tv+ecvs        eas+kcq+ekrkti+gddll a+a+lGfedyv plk yl+ yre
  DCAR_019140 16 REHDRIFPIANISRIMKKGMPANGKISKDAKDTVEECVS--------EASEKCQKEKRKTIDGDDLLGAMANLGFEDYVGPLKNYLSCYRE 98
                 899**********************************97........6******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.104.0E-331199IPR009072Histone-fold
SuperFamilySSF471131.57E-261999IPR009072Histone-fold
PfamPF008083.7E-152277IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006153.7E-64159No hitNo description
PRINTSPR006153.7E-66078No hitNo description
PRINTSPR006153.7E-67997No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MADGSSSQAG GSSESREHDR IFPIANISRI MKKGMPANGK ISKDAKDTVE ECVSEASEKC  60
QKEKRKTIDG DDLLGAMANL GFEDYVGPLK NYLSCYRESM FLYWLTFYHH EFSLTPCISS  120
YVLVWFMVGE IANRWRVILR DLLGEGRDQL RRIRTLDLIS LQISSMLKAW AT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B2e-301698292Transcription factor HapC (Eurofung)
4g92_B2e-301698292Transcription factor HapC (Eurofung)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017251913.12e-53PREDICTED: nuclear transcription factor Y subunit B-3-like
SwissprotQ9SLG02e-40NFYB1_ARATH; Nuclear transcription factor Y subunit B-1
TrEMBLA0A164ZGL91e-125A0A164ZGL9_DAUCS; Uncharacterized protein
STRINGAquca_027_00124.12e-41(Aquilegia coerulea)
STRINGVIT_13s0019g03600.t012e-41(Vitis vinifera)
STRINGXP_004169107.11e-41(Cucumis sativus)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38880.64e-40nuclear factor Y, subunit B1