PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_019145
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family AP2
Protein Properties Length: 372aa    MW: 40964.4 Da    PI: 9.633
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_019145genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.21.5e-16104153155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  s+++GV++++++grW+++I+d      + ++++lg f+ta  Aa+a+++a+ k++g
  DCAR_019145 104 SQFRGVTFYRRTGRWESHIWD------CgRQVYLGGFDTAHAAARAYDRAAVKFRG 153
                  789******************......55************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.55E-15104162IPR016177DNA-binding domain
PfamPF008472.2E-8105153IPR001471AP2/ERF domain
SMARTSM003801.3E-31105167IPR001471AP2/ERF domain
PROSITE profilePS5103217.385105161IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.8E-17105162IPR001471AP2/ERF domain
CDDcd000185.60E-11105163No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MLDLNINDTA QTSSSDTSIS SVVNGSPAIP ADNALITRQL FPVSGLEAEK TSHGTEAESQ  60
WLNLSVPRAG AYTGGLVDEK AIMSATPPLM KAKKSRRGPR SRSSQFRGVT FYRRTGRWES  120
HIWDCGRQVY LGGFDTAHAA ARAYDRAAVK FRGPDADINF TASDYEDDLK QTKDLTKEEF  180
VHIIRRQSSV LSRSSSKYRG VTLHNNVQWG TQLDNFLGKK DSNKGDGPVA ETKFVPRTCH  240
NNVSLANKNL DSAETHHNLD LNLWISPPSH SHDAASHLSG VKGSKDERYA PAGRKSPYYF  300
SSWPGNHPGL APNYEVTSYK EMEVQVVPSR GNSNRVWQAN RQVVDTLPLF STAASSGFPC  360
TSRTFQPPSY R*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017249631.10.0PREDICTED: ethylene-responsive transcription factor RAP2-7
SwissprotQ9SK035e-58RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7
TrEMBLA0A164ZGP70.0A0A164ZGP7_DAUCS; Uncharacterized protein
STRINGGorai.009G104200.14e-78(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.25e-50related to AP2.7