PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_019214
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family C2H2
Protein Properties Length: 139aa    MW: 15038.2 Da    PI: 6.5048
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_019214genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H220.99.7e-073759123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 y C  C+++Fs+++ L+ H+++H
  DCAR_019214 37 YACDFCPMTFSSSMALRGHQNRH 59
                 89********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.48E-53463No hitNo description
Gene3DG3DSA:3.30.160.601.6E-43560IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.3253764IPR007087Zinc finger, C2H2
SMARTSM003550.00733759IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002803959IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 139 aa     Download sequence    Send to blast
MGSKNLKRSA SSQSPPVTKQ SLAITPVPPP QEPTKAYACD FCPMTFSSSM ALRGHQNRHK  60
KPRASTKKAE TDPVPEHCVF CAHWKLMALK MAYRDFLGVG VPSAQETADP EASGGMGIVI  120
NLEDDEDEAP ELDLELKL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017251147.19e-29PREDICTED: zinc finger protein 6-like
TrEMBLA0A162A4722e-98A0A162A472_DAUCS; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G27880.13e-07C2H2 family protein