PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_019338

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

LBD

Protein Properties

Length: 133aa MW: 14716.5 Da PI: 7.148

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_019338	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	128.2	3.7e-40	7	106	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +CaaCk+lrrkC++dC+++pyfp+++p++f +vh+++Gasn+ k+lk+lp + r da++sl++eA+ r dPvyG+vg+i++l+++++ +++ela+++ DCAR_019338 7 RCAACKYLRRKCPSDCIFSPYFPSDDPQRFSCVHRIYGASNIGKMLKQLPVQLRADAANSLYFEAHSREADPVYGCVGIITNLNEEIHDAETELAKIQ 104 6**********************************************************************************************999 PP DUF260 99 ee 100 ++ DCAR_019338 105 AH 106 86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	24.519	6	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.4E-39	7	104	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 133 aa Download sequence Send to blast
MTSTRSRCAA CKYLRRKCPS DCIFSPYFPS DDPQRFSCVH RIYGASNIGK MLKQLPVQLR 60 ADAANSLYFE AHSREADPVY GCVGIITNLN EEIHDAETEL AKIQAHIGVH HQTKNPEDGE 120 ASQSGHSPVQ QQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-34	8	100	12	104	LOB family transfactor Ramosa2.1
5ly0_B	1e-34	8	100	12	104	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017251950.1	2e-96	PREDICTED: LOB domain-containing protein 24-like
Swissprot	P59468	4e-48	LBD24_ARATH; LOB domain-containing protein 24
TrEMBL	A0A164ZLM2	4e-95	A0A164ZLM2_DAUCS; Uncharacterized protein
STRING	XP_010025110.1	4e-54	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5277	20	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26660.1	2e-50	LOB domain-containing protein 24

Link Out ? help Back to Top
Phytozome	DCAR_019338