PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_019368
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family ARR-B
Protein Properties Length: 723aa    MW: 78986.1 Da    PI: 6.2467
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_019368genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like90.81.2e-28204257155
      G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                  kpr++W+ eLH++Fv av+qL G ekA+Pk+il+lm+v+gLt+e+v+SHLQkYRl
  DCAR_019368 204 KPRVVWSIELHRKFVAAVNQL-GLEKAVPKRILDLMNVDGLTRENVASHLQKYRL 257
                  79*******************.********************************8 PP
2Response_reg79.41.2e-26231311109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   vl vdD+p+ ++ll+ +l+k +y +v+ a +++ al++l+e++  +Dli+ D+ mp+mdG++ll+     e++lp+i+++a+++++++ + +  Ga 
   DCAR_019368  23 VLAVDDDPTCLKLLEGLLRKCQY-HVTLANQARIALNMLRENRnrFDLIISDVHMPDMDGFKLLELVGL-EMDLPVIMLSANSDPKLVMKGITHGAC 117
                   799********************.***************999889*******************87754.558************************ PP

                   EEEESS--HHHHHH CS
  Response_reg  96 dflsKpfdpeelvk 109
                   d+l+Kp+  eel++
   DCAR_019368 118 DYLVKPVRVEELRN 131
                   ***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363921.2E-1651676IPR017053Response regulator B-type, plant
Gene3DG3DSA:3.40.50.23001.3E-4219157No hitNo description
SuperFamilySSF521724.13E-3619141IPR011006CheY-like superfamily
SMARTSM004482.8E-3221133IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011043.65722137IPR001789Signal transduction response regulator, receiver domain
PfamPF000725.7E-2423132IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.67E-2724136No hitNo description
Gene3DG3DSA:1.10.10.606.6E-30201262IPR009057Homeodomain-like
PROSITE profilePS5129411.818201260IPR017930Myb domain
SuperFamilySSF466892.15E-19202261IPR009057Homeodomain-like
TIGRFAMsTIGR015571.7E-24204257IPR006447Myb domain, plants
PfamPF002491.5E-6206256IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0009414Biological Processresponse to water deprivation
GO:0010082Biological Processregulation of root meristem growth
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0031537Biological Processregulation of anthocyanin metabolic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048367Biological Processshoot system development
GO:0080022Biological Processprimary root development
GO:0080036Biological Processregulation of cytokinin-activated signaling pathway
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 723 aa     Download sequence    Send to blast
MTVEETRASS GNDFDDFPKG MRVLAVDDDP TCLKLLEGLL RKCQYHVTLA NQARIALNML  60
RENRNRFDLI ISDVHMPDMD GFKLLELVGL EMDLPVIMLS ANSDPKLVMK GITHGACDYL  120
VKPVRVEELR NIWQHVVRKK VDPKSRDKSN SSYDRDQQGS EGGQGPAVTG NVDQDGKSSR  180
KRKDDEEEDE ENDQDDVDPS AQKKPRVVWS IELHRKFVAA VNQLGLEKAV PKRILDLMNV  240
DGLTRENVAS HLQKYRLYLK RISTAASQQA NMVAALGGKD ASYLRMGSLD GYGDYRTLTG  300
SGRLPGTGLS SYAPSGMLGR LNSPAGVSLR GLASPTIIQP NLAQSLSNPA FGKFQTIGSQ  360
AHQNPNFFQG IPSSLELDQF QQTKSTTQVG DFSAIDSHRS FSAATNSFAD TRAAVNSSNL  420
LGTGPSNPLL LQGNTQQIQN GLGFVNQSSV NVPSLTSDSF NVGTSGSSNI MDDGRGQEWP  480
FQVSKFSSNP LPLNEPFNTA QMPPNSMIYN SSSSSIHIQN SPMQFPSNST ISAPIEDSRG  540
EHQGGLVGNF VQNVNQLPNQ RFRQHKQDYT NNSNNAFSAL STLSNSNGGT TPFSQTVDQD  600
NGGYNRRVNG SVSSIMQHGE TEKSPMNMKM RSTDGYILDQ TKSHGGLVPN NYDSLDDIMN  660
AVMKRHSSSH LCPTLLCVLQ QSFTPLKTNA KNFLPCETQE QDGAMLMEGE FGLDAYTFGS  720
CI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A6e-27200263164ARR10-B
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017253699.10.0PREDICTED: two-component response regulator ARR12-like
TrEMBLA0A164ZMD00.0A0A164ZMD0_DAUCS; Uncharacterized protein
STRINGVIT_11s0206g00060.t010.0(Vitis vinifera)
STRINGXP_009757804.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22582458
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-137response regulator 12