PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_019384
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family B3
Protein Properties Length: 376aa    MW: 41568.2 Da    PI: 8.7903
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_019384genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B368.59.1e-22139232183
                  EEEE-..-HHHHTT-EE--HHH.HTT...........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                  f+kvlt+sdv+k +rlv+pk+f   +              + ++++l ++des + W+++++y+kks++y ++kGW++Fv++++L+ +D ++F 
  DCAR_019384 139 FDKVLTSSDVSKINRLVIPKTFSGFFpcisnengsssRRLPVNNVELNFYDESKKLWQFRYCYWKKSRTYSFSKGWSKFVEEKDLRPKDKIIFL 232
                  89********************75558777788766633345899**********************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.9E-24134233IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.88E-22136233IPR015300DNA-binding pseudobarrel domain
CDDcd100171.23E-21137241No hitNo description
SMARTSM010191.0E-12139249IPR003340B3 DNA binding domain
PROSITE profilePS5086311.18139250IPR003340B3 DNA binding domain
PfamPF023621.9E-18139232IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MGDLLNFTAF ILGLPSGLNS RRDDQSSNER ARHNRNISGS SSVGVIKLPN ENWEAYTYDN  60
NNWSSIGIFE TEKKAAIAFE SRTIEKYIEF WNGYLQRISN GEQEPLTLEL ASTRRTLSSS  120
SGNISQGNSN RECIRTKLFD KVLTSSDVSK INRLVIPKTF SGFFPCISNE NGSSSRRLPV  180
NNVELNFYDE SKKLWQFRYC YWKKSRTYSF SKGWSKFVEE KDLRPKDKII FLKCEYIEAG  240
SIVGTRFIID VEYDPSRVQV EEVGDDLGDP VVLSPSQEVQ NLQNEENGGE VRRGSADGRS  300
AKRTKADKDS KGAGPGEAAG RGAKRTKADK NSEGAGPGEA AETGAKRTKV DKNSEGAGPG  360
EAAETGFKLF GVRIA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A1e-1913823113100DNA-binding protein RAV1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017252209.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g51120-like
RefseqXP_017252211.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g51120-like
RefseqXP_017252212.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g51120-like
TrEMBLA0A162A4M50.0A0A162A4M5_DAUCS; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51120.17e-27RAV family protein