PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_019428
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family ERF
Protein Properties Length: 142aa    MW: 16295.1 Da    PI: 10.7209
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_019428genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2538.5e-172776255
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                  y+G+r +k +g+WvAeIr+p   +kr r++lg++ ++  Aa+a++ a  +l+g
  DCAR_019428 27 IYRGIRMRK-WGKWVAEIREP---NKRSRIWLGSYSSPVAAARAYDTAVFYLRG 76
                 59*****99.**********9...336*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.29E-292686No hitNo description
Gene3DG3DSA:3.30.730.108.9E-302785IPR001471AP2/ERF domain
SMARTSM003801.0E-372790IPR001471AP2/ERF domain
PfamPF008471.1E-102776IPR001471AP2/ERF domain
SuperFamilySSF541714.9E-212785IPR016177DNA-binding domain
PROSITE profilePS5103222.0622784IPR001471AP2/ERF domain
PRINTSPR003676.1E-122839IPR001471AP2/ERF domain
PRINTSPR003676.1E-126686IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    Send to blast
MEGSTDCCSS NLDDKRKHSK HQENTKIYRG IRMRKWGKWV AEIREPNKRS RIWLGSYSSP  60
VAAARAYDTA VFYLRGPSAR LNFPELITDE PGDQLHDLSA ASIKKKLLRL ELGLTLFRPL  120
IMVLMILRMF RIRVGFITNL T*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-152684463ATERF1
3gcc_A4e-152684463ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018819909.12e-50PREDICTED: ethylene-responsive transcription factor RAP2-1-like
SwissprotQ9FH946e-39ERF10_ARATH; Ethylene-responsive transcription factor ERF010
TrEMBLA0A164ZNW61e-100A0A164ZNW6_DAUCS; Uncharacterized protein
STRINGXP_008393783.17e-48(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9432390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67190.12e-41DREB and EAR motif protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]