PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_019444
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family HSF
Protein Properties Length: 313aa    MW: 35043.5 Da    PI: 7.4752
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_019444genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind84.41.5e-2625103277
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTT...XTT CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekksks...kek 77 
                   Fl+k+y++++d+++++++sw e+ ++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+Y  ++ +++ ++ +    +++
   DCAR_019444  25 FLTKTYQLVDDPATDHIVSWGEDDSTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYIHRRKTSQPQQMSLnhhHQS 103
                   9**********************************************************99888777766333222244 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.1E-2917100IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004157.0E-3121127IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.09E-2322100IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004477.1E-2325101IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.3E-162548IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.3E-166375IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.3E-167688IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008356Biological Processasymmetric cell division
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MALMLDECES ILLSLDSHKS VPAPFLTKTY QLVDDPATDH IVSWGEDDST FVVWRPPEFA  60
RDLLPNYFKH NNFSSFVRQL NTYIHRRKTS QPQQMSLNHH HQSPMGIHHP GFFSYPNRLS  120
ISPTDSDEQA NNWSCESPQP LSSPNGAAAP NIYNTSVMAL SEDNERLRRN NNMLMSELAH  180
MRKLYNDIIY FVQNHVKPVA PSNSYPPSLI LPNGLAPSGV AMSGNGSGVQ QKSMNQHFNI  240
GYHNQQYNHQ TNNMTKQGGN EGAKLFGVPL QCSKKRSLHP EFLGSMGMST NKPRLVLEKD  300
DLGLNLMPPS PC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-162111926122Heat shock factor protein 1
5d5v_B3e-162111926122Heat shock factor protein 1
5d5v_D3e-162111926122Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00187DAPTransfer from AT1G46264Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017250290.10.0PREDICTED: heat stress transcription factor B-4
SwissprotQ9C6353e-81HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBLA0A162A4S50.0A0A162A4S5_DAUCS; Uncharacterized protein
STRINGcassava4.1_010465m1e-127(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27212450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.11e-66heat shock transcription factor B4