PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_019446
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family bHLH
Protein Properties Length: 256aa    MW: 28377.6 Da    PI: 9.7964
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_019446genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH261.6e-08159199954
                  HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                   r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  DCAR_019446 159 ARHRRERISERIRILQRLVPGG-----TKMDTASMLDEAIHYVKFL 199
                  699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.434150199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-13151208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-14154209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.3E-14156205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.5E-6160199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.46E-6173204No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MDIDMLKSAP EDQIDMLMMM QMDKLSEFCG GSYNEVVSGM APMEFPQGNN ISSGNKISGL  60
PQYIENSPTF MNLPSNNISF TGSPVQEPNE HPFLSNSMGR WRNGGEVPSQ AQKRNSMAAM  120
REMIFRIAAM QPIHIDPESV KPPKRRNVKI SKDPQSVAAR HRRERISERI RILQRLVPGG  180
TKMDTASMLD EAIHYVKFLK NQVQTLERVA VNRPAAPGLG FPVPMSSGSF IPMQQATKGF  240
QSSVAAQNVQ HFLDA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017251799.10.0PREDICTED: transcription factor HEC2-like
TrEMBLA0A164ZPA90.0A0A164ZPA9_DAUCS; Uncharacterized protein
STRINGVIT_18s0001g10400.t011e-95(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA75223101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67060.17e-43bHLH family protein