PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_019459
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family B3
Protein Properties Length: 572aa    MW: 63167.6 Da    PI: 9.1567
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_019459genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.28.2e-15464553198
                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                  f+k +++s+++   +l lp++ +++h  +k ++ t+tl de+g++    +  rk +    l++GW++F  ++gL +gD +vF+l++  +f  +v ++r
  DCAR_019459 464 FVKPMLQSHTTGGFWLGLPNSWCRTHL-PK-NDATITLIDEEGEECLTVYLARKAG----LSGGWRGFSIDHGLVDGDALVFQLIRPLTF--KVYIIR 553
                  89************************4.32.5679***********9999555555....************************985444..787776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF517352.52E-621271IPR016040NAD(P)-binding domain
Gene3DG3DSA:3.40.50.7201.1E-564321IPR016040NAD(P)-binding domain
CDDcd052281.14E-1136321No hitNo description
PfamPF013703.2E-276234IPR001509NAD-dependent epimerase/dehydratase, N-terminal domain
SuperFamilySSF517352.52E-62299321IPR016040NAD(P)-binding domain
SuperFamilySSF1019366.67E-22458555IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.0E-17459555IPR015300DNA-binding pseudobarrel domain
CDDcd100171.33E-23462553No hitNo description
PfamPF023621.3E-12464553IPR003340B3 DNA binding domain
SMARTSM010192.7E-21464555IPR003340B3 DNA binding domain
PROSITE profilePS5086310.87464555IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0003824Molecular Functioncatalytic activity
GO:0050662Molecular Functioncoenzyme binding
Sequence ? help Back to Top
Protein Sequence    Length: 572 aa     Download sequence    Send to blast
MKKMKVLVTG ASGYLGGRLC HALLAQGHSV RAFVRPTSDV SSLPLDENIE FSYGDVTDYS  60
SLLVAASGCQ IIFHSAAIVE PWHPDPSIFI AVNVGGLKNV LKAFKETGTI EKIIYTSSFF  120
ALGSTDGYVA DESQIHSGNY FCTEYEKSKV IADKMALDAA SEGVPIIPLY PGLIYGPGKV  180
TTGNIVARLI IERFNWRLPG YIGQGADKVS FSHVDDVVQG HLAALNKGRP GERYLLTGEN  240
ASFMQVFDIC ATISGTGKPR FSIPLLVIEA YGWLSVFASK IMGTLPIISP PTVNVVRHQW  300
AYSCDKAEKE LDYKPRSLKE ASSAVKMVMP KAKNESKSAA SGSAYEELRR KRMEENRKKL  360
EELKLPRLSL ALKPSPKPPK SSPMKRVKKT EVVEVRRSGR FVNKPAPVYR EVVTYERPDL  420
PRRYFKYSRK DLANRVYASD EARAAATYKA EELEVSLGND YPTFVKPMLQ SHTTGGFWLG  480
LPNSWCRTHL PKNDATITLI DEEGEECLTV YLARKAGLSG GWRGFSIDHG LVDGDALVFQ  540
LIRPLTFKVY IIRVNAYEKG DNMEALDAAD I*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3wj7_A5e-47732117327Putative oxidoreductase
3wj7_B5e-47732117327Putative oxidoreductase
3wj7_C5e-47732117327Putative oxidoreductase
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017254190.10.0PREDICTED: putative dihydroflavonol-4-reductase
TrEMBLA0A164ZPN90.0A0A164ZPN9_DAUCS; Uncharacterized protein
STRINGXP_009760283.11e-176(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16282371
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.12e-53B3 family protein