PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_019483

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

Dof

Protein Properties

Length: 210aa MW: 22128.7 Da PI: 5.0105

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_019483	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124	4.9e-39	26	84	3	61
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++al+cprCds ntkfCyynny+l+qPr+fCkaCrryWt+GG+lrnvPvGgg+rk+ ++ DCAR_019483 26 TEALPCPRCDSINTKFCYYNNYNLAQPRHFCKACRRYWTRGGTLRNVPVGGGTRKSSSV 84 6889***************************************************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	6.0E-25	27	82	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.4E-33	28	82	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.078	29	83	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	31	67	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 210 aa Download sequence Send to blast
MSSDSAEKTA ASKRFSFQTG AKPQDTEALP CPRCDSINTK FCYYNNYNLA QPRHFCKACR 60 RYWTRGGTLR NVPVGGGTRK SSSVKRSRNG STPVVSAPQE VVQEMAVMNP CELNLNQAVC 120 VDDPMGGLNC EFGLGGGGLG FDVAPWEWSI GGEVGGEIDQ SVCASTTSGG ELVGPGGGCN 180 TWQVEGGLGE GEYYCWSDLA MSTPGNGVK*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP002537	4e-38	AP002537.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0001B06.
GenBank	AP002746	4e-38	AP002746.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0671B11.
GenBank	AP014957	4e-38	AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBank	CP012609	4e-38	CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
GenBank	GQ183547	4e-38	GQ183547.1 Oryza sativa Japonica Group Dof-type zinc finger protein 18 gene, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017251551.1	1e-154	PREDICTED: dof zinc finger protein DOF1.6-like
TrEMBL	A0A164ZQ99	1e-152	A0A164ZQ99_DAUCS; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA88	24	419

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51700.1	1e-34	DOF zinc finger protein 1

Link Out ? help Back to Top
Phytozome	DCAR_019483