PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_019534
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB_related
Protein Properties Length: 101aa    MW: 11515.8 Da    PI: 9.6318
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_019534genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.19.7e-091558344
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                      WT+   +++ +a + +  +   +W+ Iar +g g++ +++k ++
      DCAR_019534 15 TWTQRQNKQFEEALATYDRDtpdRWHNIARAVG-GKSTEEVKRHY 58
                     7*****************99*************.**********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007174.9E-81264IPR001005SANT/Myb domain
PROSITE profilePS500906.3071462IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.2E-71468IPR009057Homeodomain-like
PfamPF002493.4E-61558IPR001005SANT/Myb domain
CDDcd001673.02E-71558No hitNo description
SuperFamilySSF466892.96E-131669IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 101 aa     Download sequence    Send to blast
MASNSITSSR NCGSTWTQRQ NKQFEEALAT YDRDTPDRWH NIARAVGGKS TEEVKRHYDI  60
LVKDIMQIES DQVPLPNYKN TGGNGRGFNN EQRLFKNLRL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A4e-356100192RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017251677.13e-71PREDICTED: protein RADIALIS-like 3
SwissprotQ1A1733e-38RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A162A4Z77e-70A0A162A4Z7_DAUCS; Uncharacterized protein
STRINGSolyc12g089190.1.12e-44(Solanum lycopersicum)
STRINGXP_009611761.11e-44(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20224231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.21e-40RAD-like 6