PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_019572

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

HD-ZIP

Protein Properties

Length: 190aa MW: 21952.7 Da PI: 8.0959

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_019572	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57	3.3e-18	12	66	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 k+ ++t+eq++ Lee F+ n+ + +++ +LA++l+++ rq+ +W+qN+Ra++k+ DCAR_019572 12 KKKRLTQEQVRLLEESFNGNNRLEPDRKLQLAHELDIPPRQIAIWYQNKRARWKN 66 56779************************************************95 PP
2	HD-ZIP_I/II	108	7e-35	12	103	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 kk+rl++eqv+lLEesF+ +++Lep+rK +la+eL++ prq+a+W+qn+RAR+k++ lE dy+a++ +++a +++++Lekev++Lr+el++ DCAR_019572 12 KKKRLTQEQVRLLEESFNGNNRLEPDRKLQLAHELDIPPRQIAIWYQNKRARWKNQSLELDYTAVHMRLEAALAHKRQLEKEVQRLRAELQK 103 9****************************************************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	16.277	7	67	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.04E-17	9	75	IPR009057	Homeodomain-like
SMART	SM00389	1.8E-15	9	71	IPR001356	Homeobox domain
Pfam	PF00046	1.5E-15	12	66	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	2.2E-18	13	73	IPR009057	Homeodomain-like
CDD	cd00086	4.16E-13	15	68	No hit	No description
PROSITE pattern	PS00027	0	42	65	IPR017970	Homeobox, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 190 aa Download sequence Send to blast
MNMKNGSSKS SKKKRLTQEQ VRLLEESFNG NNRLEPDRKL QLAHELDIPP RQIAIWYQNK 60 RARWKNQSLE LDYTAVHMRL EAALAHKRQL EKEVQRLRAE LQKYSEFQIS TKQHVQMLQP 120 QPQPHRQLVS VSSISSNCDE VGSSSLHDDQ VNCSWMNEDD QAALRVEEFY ACLMGTNGIN 180 SNIEFNSNV*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017251569.1	1e-140	PREDICTED: homeobox-leucine zipper protein ATHB-52
TrEMBL	A0A162A6Z2	1e-138	A0A162A6Z2_DAUCS; Uncharacterized protein
STRING	XP_009608121.1	5e-51	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2715	24	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53980.1	8e-31	homeobox protein 52

Link Out ? help Back to Top
Phytozome	DCAR_019572