PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_019583
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family HB-other
Protein Properties Length: 798aa    MW: 88577.3 Da    PI: 5.0607
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_019583genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox16.21.8e-052843401054
                  HHHHHHHHHHHHSSS..--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHH CS
     Homeobox  10 eqleeLeelFeknry..psaeereeLAkkl..........gLterqVkvWFqNrRak 54 
                  +q+ e+e+l e + y  ps+e    LA+k            ++ +qV  WFqNrR+ 
  DCAR_019583 284 YQVAEMEALLEAHDYamPSREILDALAEKFsltaersgkfVVQMKQVWHWFQNRRYA 340
                  7899999999985555599999******999999999999999************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.3007.7E-527123IPR027417P-loop containing nucleoside triphosphate hydrolase
SuperFamilySSF525404.36E-419125IPR027417P-loop containing nucleoside triphosphate hydrolase
PROSITE profilePS5141927.199270No hitNo description
CDDcd018683.98E-9111126No hitNo description
SMARTSM001733.5E-711163No hitNo description
TIGRFAMsTIGR002311.7E-2912130IPR005225Small GTP-binding protein domain
SMARTSM001753.0E-6314177No hitNo description
PRINTSPR004496.7E-241435No hitNo description
PfamPF000712.7E-4215125IPR001806Small GTPase superfamily
SMARTSM001741.6E-616186No hitNo description
SMARTSM001761.6E-419226No hitNo description
PRINTSPR004496.7E-243753No hitNo description
PRINTSPR004496.7E-245577No hitNo description
SMARTSM004797.1E-2189257IPR013520Exonuclease, RNase T/DNA polymerase III
CDDcd061443.24E-70123249No hitNo description
SuperFamilySSF530981.29E-22123257IPR012337Ribonuclease H-like domain
Gene3DG3DSA:3.30.420.102.0E-45124271IPR012337Ribonuclease H-like domain
PfamPF009298.7E-9132248IPR013520Exonuclease, RNase T/DNA polymerase III
SuperFamilySSF466892.69E-8269342IPR009057Homeodomain-like
PROSITE profilePS500719.556272344IPR001356Homeobox domain
SMARTSM003894.7E-4274348IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.607.1E-6283345IPR009057Homeodomain-like
CDDcd000862.94E-5283339No hitNo description
PfamPF167191.4E-40399526IPR032001SAWADEE domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007264Biological Processsmall GTPase mediated signal transduction
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
GO:0005525Molecular FunctionGTP binding
Sequence ? help Back to Top
Protein Sequence    Length: 798 aa     Download sequence    Send to blast
MAAYRGDDDY DYLFKVVIIG DSGVGKSNLL SRFTKNEFSL DSKSTIGVEF ATRSIRVDDK  60
VVKAQIWDTA GQERYRAITS AYYRGAVGAL LVYDVTRHVT FENVERWLKE LRDHTDANIV  120
IMLVNKWGNV IYDEFVRPVD YVVDFRTQIS GIRPSDLKKA KDFRVVQNKV AELLKGRILV  180
GHALRNDLKA LLLSHPKMDI RDTAEYQPFL KEGRSKALRH LASEFLNVVI QNGEHCPIED  240
ARAAMLLYQK NKKQWERSIK DRIRFTQKMK KRKHRKGSVA QGDYQVAEME ALLEAHDYAM  300
PSREILDALA EKFSLTAERS GKFVVQMKQV WHWFQNRRYA VRAKASRPLT QDDSSTVTNM  360
PQAPQSKPSP QDTAIDVTEG PQTSPEIQGT GRNGADSNSM EFEAKSARDG AWYDVAMFLS  420
HRSVNAQDPE VLVRFAGFGA EEDEWVDIGR LVRKRSLPCE SSECVAVLQG DLILCFQEGK  480
DQALYYDAHV LDAQRRRHDV RGCRCRFLVR YDHDQSEEIV PLRKVCRRPE TDYRLQQLYA  540
SNEPASANQS KAGAVPCTDN TLRVYPPVEP VQKQRKIQDI LDNVPAVPGT SQTNLLVGTE  600
IKAEQTDVDD IADAGTIENS GALQSNDSPQ PEDLKTDSPS MEISDAGDNS LQPQVLKIES  660
PSAMEVSDAG NNSLPPQVIK VSSPVTMETS DAGNSSLHPE VMENVGPSTT EISDAGGVQQ  720
PKVTEITNVG DLDSLNASPT IVMQQEVAEI VSDADLGNSP VPHVNDSQEN LPVAPQSEIE  780
ETSGSSGSEN IPLGAAA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ixv_E6e-6871247124Ras-related protein Rab-11A
6ixv_F6e-6871247124Ras-related protein Rab-11A
6ixv_G6e-6871247124Ras-related protein Rab-11A
6ixv_H6e-6871247124Ras-related protein Rab-11A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017253810.10.0PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 2-like isoform X2
TrEMBLA0A164ZSK40.0A0A164ZSK4_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA88032124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.31e-101sequence-specific DNA binding transcription factors;sequence-specific DNA binding