PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_019739
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family C3H
Protein Properties Length: 1213aa    MW: 132719 Da    PI: 5.8549
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_019739genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.43.3e-104166126
                 --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                 ++++ C ff rtGtC yG +C+F+H+
  DCAR_019739 41 PGEPDCAFFIRTGTCGYGVNCRFNHP 66
                 5789*********************8 PP
2zf-CCCH35.61.5e-1189113327
                  S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                  ++ C +f++tG CkyG++Ck++H+p
  DCAR_019739  89 EPDCEYFLKTGACKYGPSCKYHHPP 113
                  789********************96 PP
3zf-CCCH37.92.9e-12136158527
                  --SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                   C++++rtGtCk+G  CkF+H++
  DCAR_019739 136 SCSYYMRTGTCKFGVACKFNHPE 158
                  6********************96 PP
4zf-CCCH35.61.6e-11239264227
                  -S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                  +++ Cr+f+ tG CkyG+ Ck++H++
  DCAR_019739 239 DQPVCRHFMNTGVCKYGSDCKYNHPR 264
                  5799********************96 PP
5zf-CCCH30.27.8e-10285309226
                  -S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                  +++ C+++  +G+CkyG++Ck+ H+
  DCAR_019739 285 GQAVCSYYTTYGICKYGPTCKYDHP 309
                  7899********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.5824068IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-44067IPR000571Zinc finger, CCCH-type
PfamPF006425.4E-74266IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.41E-54568IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-44666IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.22586114IPR000571Zinc finger, CCCH-type
SMARTSM003564.5E-786113IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-989113IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-591116IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-492112IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.047131159IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-5131158IPR000571Zinc finger, CCCH-type
SMARTSM003565.7E-5133158IPR000571Zinc finger, CCCH-type
PfamPF006429.5E-10135158IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.3E-5136157IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.201237265IPR000571Zinc finger, CCCH-type
SMARTSM003568.1E-6238264IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.16E-7239267IPR000571Zinc finger, CCCH-type
PfamPF006425.7E-9239264IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.1E-6242265IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-5282309IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.22283311IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-6283310IPR000571Zinc finger, CCCH-type
PfamPF006423.4E-7285309IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.40.50.18202.8E-104421781IPR029058Alpha/Beta hydrolase fold
PfamPF040838.8E-20425480IPR006693Partial AB-hydrolase lipase domain
SuperFamilySSF534741.26E-51425781IPR029058Alpha/Beta hydrolase fold
PROSITE profilePS5135215.235789901IPR013766Thioredoxin domain
Gene3DG3DSA:3.40.30.101.4E-38791912IPR012336Thioredoxin-like fold
SuperFamilySSF528333.38E-33793900IPR012336Thioredoxin-like fold
CDDcd030015.84E-54796896No hitNo description
PfamPF000858.9E-29797898IPR013766Thioredoxin domain
TIGRFAMsTIGR011261.1E-33800899IPR005788Disulphide isomerase
PRINTSPR004211.4E-5816824No hitNo description
PROSITE patternPS001940817835IPR017937Thioredoxin, conserved site
PROSITE profilePS5135214.7929141035IPR013766Thioredoxin domain
Gene3DG3DSA:3.40.30.101.0E-359231042IPR012336Thioredoxin-like fold
CDDcd030014.23E-509281030No hitNo description
SuperFamilySSF528331.14E-309291034IPR012336Thioredoxin-like fold
PfamPF000859.2E-279311028IPR013766Thioredoxin domain
TIGRFAMsTIGR011266.5E-329331032IPR005788Disulphide isomerase
PROSITE patternPS001940949967IPR017937Thioredoxin, conserved site
PRINTSPR004211.4E-5956965No hitNo description
PRINTSPR004211.4E-59961007No hitNo description
SuperFamilySSF528333.4E-610391162IPR012336Thioredoxin-like fold
CDDcd029833.28E-5310391179No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006629Biological Processlipid metabolic process
GO:0034976Biological Processresponse to endoplasmic reticulum stress
GO:0045454Biological Processcell redox homeostasis
GO:0005783Cellular Componentendoplasmic reticulum
GO:0009505Cellular Componentplant-type cell wall
GO:0016853Molecular Functionisomerase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1213 aa     Download sequence    Send to blast
MPETRHLNRN AHEAGRRLKN QTSENHDGDG DGVVVSYPDR PGEPDCAFFI RTGTCGYGVN  60
CRFNHPSDLV EAKEKIARFR GDLPLRIGEP DCEYFLKTGA CKYGPSCKYH HPPDRYGAGP  120
VVLNSFGLPV RQEEKSCSYY MRTGTCKFGV ACKFNHPELS SAGNVLPVLG TAVGGSGGLI  180
IVPPSGLYAG GIPSWALLNE AYIISPLSQG LGWNTYMGGM NGQITPALTT ANVLPERQDQ  240
PVCRHFMNTG VCKYGSDCKY NHPREKISQL AASSLGPLGL PLRPGQAVCS YYTTYGICKY  300
GPTCKYDHPL VGYSYEGYSY NYGTDFPAAS VSNSSSFHYQ ESFPIIHSYE TSPSKSSKFP  360
EWAGKVDAPS KKDTDVEAAE ESPEPAGSLS PSSSPRAAVG SRVKLFEAKK GSSAASDDGV  420
CSSVVAPQGY VCEEHTVTTQ DGYILSMQHI PNGRSGVSTG SKPPVLLQHG LLMDAITWLL  480
SPPDQSLALL LADNGFDVWL TSTRGTKYSQ GHTSLSTNDA AYWNWSWDEL VAYDLPATFQ  540
YVNDQTGQKL HYVGHSLGTL TALSAFSKGQ LVSMLQSAAL LSPIAYVGQV TSPLATNAAD  600
DFLAEDLKWL GINEFNPRGD AVLKLLKEIC AKPGVDCTNL LTSFTGQNCC LNSSVVDFFL  660
THEPQPTSTK NMVHVAQMIR DGTIHMYDYG NADDNNQHYG QSTPPIYDMS SIPNDLPLFF  720
ANGGADALSD VNDVQLLHDD LKDHDADKMV FQYQDDYAHA DYVMAVNAKQ VVYNPLMAFF  780
RLHHTSIDAL YGSSSPVLQL TPDNFKSKVL NSNRVVLVEF FAPWCGHCKA LTPIWEKAAT  840
ILKGVATVAA LDADAHKSLA QEYGTRGYPT IKVFLPGKPP VDYQGARDAR AIVNFAAKQV  900
KVLLKERLDG KETGKSSKKS SEKSAPTASV ELNSLNFDDL VLKSKELWVV EFFAPWCGHC  960
KKLAPEWKKA SINLKGKVKL GHVDCEADKS LMSRFNVESF PTILVFGADK ERPSIYDGAR  1020
SASALESYAL EQLEINMLPP EVTELTSQDV MEEKCGSAAI CFVAFLPDIL DSKAEGRNKY  1080
LELLLSVAEK FKMNPYRQEH FFIWKLEFYV WAAAGNQPEL EKQVGVGGYG YPALVALNVK  1140
KGAYKSLRSA FERDQIIEFI RNAGLGGKGN LQISATPEIV KTEPWDGKDG QILEEDEFSL  1200
EELMVEEAKD EL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1hlg_A2e-614217788364LIPASE, GASTRIC
1hlg_B2e-614217788364LIPASE, GASTRIC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754464e-36HG975446.1 Solanum pennellii chromosome ch07, complete genome.
GenBankHG9754494e-36HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A164ZVZ30.0A0A164ZVZ3_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA538022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.26e-77C3H family protein