PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_019789
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family C3H
Protein Properties Length: 223aa    MW: 23454.3 Da    PI: 8.3726
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_019789genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH30.27.7e-104772227
                 -S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                 k +lC+++     Ck+Gd+C+FaHg+
  DCAR_019789 47 KSRLCNNYNTADGCKFGDQCHFAHGE 72
                 679*********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501038.418117IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.9E-134376IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.314573IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.36E-84576IPR000571Zinc finger, CCCH-type
PfamPF006427.4E-74772IPR000571Zinc finger, CCCH-type
SMARTSM003560.00334772IPR000571Zinc finger, CCCH-type
PROSITE profilePS500848.555150176IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.102.5E-5151180IPR004088K Homology domain, type 1
CDDcd001058.75E-5152179No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MVGCPYGEGC HFLHYYPGGY NAVAQVMNLE PIPAAQTASN GSSPAVKSRL CNNYNTADGC  60
KFGDQCHFAH GEWELGRPIP QSNEDARDIG IIPGRFGGRI EQSPAYGAMP GRFGGRIEHP  120
VAPASGALSG RFGGRTEQPP VAPASTFGAS ATAKISVDGS LAGAIIGKGG MNSKQICREX  180
ELNLLSEITQ PTQILKTSNL REHLNKLVKR AFGLETLLKA LA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A164ZX001e-162A0A164ZX00_DAUCS; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.19e-18C3H family protein