PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_019808

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

LBD

Protein Properties

Length: 209aa MW: 22623.6 Da PI: 9.168

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_019808	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	133.8	6.6e-42	19	118	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +CaaCk+lrr+Ca++C+++pyf ++p+kfa vhk+FGasnv+kll ++pe++r da++slvyeA++r+rdPvyG++g i++lqqq+++l++el+++k DCAR_019808 19 PCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKLLLEVPENQRADAANSLVYEANVRLRDPVYGCMGAISALQQQIQSLQVELSAVK 116 7**********************************************************************************************999 PP DUF260 99 ee 100 +e DCAR_019808 117 DE 118 87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.643	18	119	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	7.9E-42	19	116	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0016020	Cellular Component	membrane

Sequence ? help Back to Top
Protein Sequence Length: 209 aa Download sequence Send to blast
MGRRHMSLRH PGSLNTITPC AACKLLRRRC AQECPFSPYF SPHEPQKFAS VHKVFGASNV 60 SKLLLEVPEN QRADAANSLV YEANVRLRDP VYGCMGAISA LQQQIQSLQV ELSAVKDEIL 120 RYNKYYTATR KTTGVLPTHV GDFISSGAAV SVINTAPLPI PTSQSQLLQQ PTSAPTTTSS 180 SSNSMYTVTT STATNYSTLS TDNVSYFG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-46	19	122	11	114	LOB family transfactor Ramosa2.1
5ly0_B	1e-46	19	122	11	114	LOB family transfactor Ramosa2.1
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00283	DAP	Transfer from AT2G30340	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017251748.1	1e-153	PREDICTED: LOB domain-containing protein 15-like
Swissprot	Q9AT61	2e-67	LBD13_ARATH; LOB domain-containing protein 13
TrEMBL	A0A164ZXB4	1e-152	A0A164ZXB4_DAUCS; Uncharacterized protein
STRING	VIT_13s0067g02380.t01	6e-86	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40470.1	6e-64	LOB domain-containing protein 15

Link Out ? help Back to Top
Phytozome	DCAR_019808

Publications ? help Back to Top
Cho C,Jeon E,Pandey SK,Ha SH,Kim J LBD13 positively regulates lateral root formation in Arabidopsis. Planta, 2019. 249(4): p. 1251-1258 [PMID:30627888]