PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_019860
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family C2H2
Protein Properties Length: 235aa    MW: 26907.5 Da    PI: 9.1295
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_019860genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.64.7e-056991123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 ++C++C + F+++  L  H++ H
  DCAR_019860 69 FECHYCFRNFPTSQALGGHQNAH 91
                 89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.06E-66696No hitNo description
PROSITE profilePS5015710.996996IPR007087Zinc finger, C2H2
PROSITE patternPS0002807191IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0010091Biological Processtrichome branching
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MEKNDKETRD FMSVESFSQL PFTRPKLLKE KGIRLFGKEF GGDPDLDSVE TNAEKVIKES  60
ENGESGRKFE CHYCFRNFPT SQALGGHQNA HKRERQNAKR AAMGYDIYPQ THSFGINYHR  120
FASGSDNSQV STYNQYPWNS NSSVYNRFYG SYGAYNHAQT PPIHGSPLSL WRNPSTNNVP  180
RLNNHDQYLT TNSSLLYSNI DRLQPSRNES SSSQNRYVYQ SSKMKDHVSL DLHL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017257153.11e-176PREDICTED: zinc finger protein GIS-like
TrEMBLA0A164X6M91e-175A0A164X6M9_DAUCS; Uncharacterized protein
STRINGXP_010243394.13e-70(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14731526
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41940.14e-37zinc finger protein 8