PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_019984

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

NAC

Protein Properties

Length: 505aa MW: 55926.3 Da PI: 4.404

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_019984	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	63.7	5.8e-20	2	49	80	128
NAM 80 sgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +gyWkatgkd+++ s +++ vglkktLv+ykgrap+ge+tdWvmhey+l DCAR_019984 2 HGYWKATGKDRTISS-NSRSVGLKKTLVYYKGRAPSGERTDWVMHEYTL 49 69**********9.999**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	27.627	1	72	IPR003441	NAC domain
SuperFamily	SSF101941	6.02E-25	2	72	IPR003441	NAC domain
Pfam	PF02365	3.6E-8	3	49	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 505 aa Download sequence Send to blast
MHGYWKATGK DRTISSNSRS VGLKKTLVYY KGRAPSGERT DWVMHEYTLD EEELRRCPSA 60 QDYYVLYKVY KKSGPGPKNG EEYGAPFKEE EWADVECVSF SGLIDQQNIA KEADASCIDS 120 TRSIILPQDQ GDDIGEFLNK IVDETVFDQP PLNVCSYTFD QLFADKENGS TLLNHCSGDV 180 SLPDQSMVPH HYPNSDMQAG FDHTLSLASQ LPIQASEVVT CMKNGEDGSG EISIEDFLEM 240 DDLLGPEPVQ NSEKPLDTPS SNEMDGFSAA DIYNDLNMIL QDMGQGGPEQ ISQLHFSDGG 300 MSNVVSHSYV NAVENGTAFY DEFTFHDEAN MMSSQVWATE QRNDLFAPET NHAPASQPNY 360 ELLVRWMVFT CHVIFHMART LVPKWGKRGV CNEDTGAIQN QSCTEDGGTD SWFTTALWSF 420 VESIPTTPAS ASENALVNKA FERMSSFGRL KTICPAGNPT STSRRRVQKF VGGMFSFSVI 480 GIVFAILWLL LAASVKLLGR YITS*

Sequence ? help Back to Top

Protein Sequence Length: 505 aa Download sequence Send to blast

MHGYWKATGK DRTISSNSRS VGLKKTLVYY KGRAPSGERT DWVMHEYTLD EEELRRCPSA  60
QDYYVLYKVY KKSGPGPKNG EEYGAPFKEE EWADVECVSF SGLIDQQNIA KEADASCIDS  120
TRSIILPQDQ GDDIGEFLNK IVDETVFDQP PLNVCSYTFD QLFADKENGS TLLNHCSGDV  180
SLPDQSMVPH HYPNSDMQAG FDHTLSLASQ LPIQASEVVT CMKNGEDGSG EISIEDFLEM  240
DDLLGPEPVQ NSEKPLDTPS SNEMDGFSAA DIYNDLNMIL QDMGQGGPEQ ISQLHFSDGG  300
MSNVVSHSYV NAVENGTAFY DEFTFHDEAN MMSSQVWATE QRNDLFAPET NHAPASQPNY  360
ELLVRWMVFT CHVIFHMART LVPKWGKRGV CNEDTGAIQN QSCTEDGGTD SWFTTALWSF  420
VESIPTTPAS ASENALVNKA FERMSSFGRL KTICPAGNPT STSRRRVQKF VGGMFSFSVI  480
GIVFAILWLL LAASVKLLGR YITS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	9e-17	3	72	96	165	NO APICAL MERISTEM PROTEIN
1ut4_B	9e-17	3	72	96	165	NO APICAL MERISTEM PROTEIN
1ut7_A	9e-17	3	72	96	165	NO APICAL MERISTEM PROTEIN
1ut7_B	9e-17	3	72	96	165	NO APICAL MERISTEM PROTEIN
4dul_A	9e-17	3	72	96	165	NAC domain-containing protein 19
4dul_B	9e-17	3	72	96	165	NAC domain-containing protein 19

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017259050.1	0.0	PREDICTED: NAC domain-containing protein 17-like
TrEMBL	A0A164X3G7	0.0	A0A164X3G7_DAUCS; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3212	24	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34190.1	2e-70	NAC domain containing protein 17

Link Out ? help Back to Top
Phytozome	DCAR_019984