PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_020042
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family HD-ZIP
Protein Properties Length: 226aa    MW: 25327.9 Da    PI: 9.3049
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_020042genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox52.96.1e-17104158256
                  T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  rk+ ++ + q ++Le+ F+ + +++ ++++ LA++l+L+ rqV vW+qNrRa+ k
  DCAR_020042 104 RKKLKLDRFQSRILEDSFKDHTTLNLKQKQALARRLNLKPRQVEVWYQNRRARNK 158
                  566778889********************************************98 PP
2HD-ZIP_I/II109.32.8e-35104191188
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 
                  +kk++l + q+++LE+sF+ +++L+ ++K++lar+L+l+prqv+vW+qnrRAR k+kq+E+++e+Lk++y++lk+en+rLekev++L+
  DCAR_020042 104 RKKLKLDRFQSRILEDSFKDHTTLNLKQKQALARRLNLKPRQVEVWYQNRRARNKLKQTEMECEMLKKCYETLKDENRRLEKEVQHLT 191
                  69************************************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.5E-1593158IPR009057Homeodomain-like
SuperFamilySSF466895.43E-1695161IPR009057Homeodomain-like
PROSITE profilePS5007115.175100160IPR001356Homeobox domain
SMARTSM003891.6E-12102164IPR001356Homeobox domain
CDDcd000868.77E-13104161No hitNo description
PfamPF000463.0E-14104158IPR001356Homeobox domain
PROSITE patternPS000270135158IPR017970Homeobox, conserved site
PfamPF021834.1E-10160192IPR003106Leucine zipper, homeobox-associated
SMARTSM003401.6E-13160203IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MNFEDLCSSG LSLGLASSER PKDRKISRGS SLNLALSLEL SSEGDVVARS GVLERQVSSI  60
SAVSSLSDSD FMKSKGGVGS IRELGGGREV FDDHDQDEDG MGGRKKLKLD RFQSRILEDS  120
FKDHTTLNLK QKQALARRLN LKPRQVEVWY QNRRARNKLK QTEMECEMLK KCYETLKDEN  180
RRLEKEVQHL TAIQGKGMMQ VPPANLTICP FCERITGSVS RFMTP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1152160RRARNKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017254986.11e-113PREDICTED: homeobox-leucine zipper protein HAT22-like
SwissprotP466032e-57HAT9_ARATH; Homeobox-leucine zipper protein HAT9
TrEMBLA0A164X2141e-164A0A164X214_DAUCS; Uncharacterized protein
STRINGfgenesh2_kg.4__202__AT2G22800.12e-57(Arabidopsis lyrata)
STRINGBostr.19427s0048.1.p2e-57(Boechera stricta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.11e-52HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]