PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_020074
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family bHLH
Protein Properties Length: 339aa    MW: 37758.3 Da    PI: 4.8019
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_020074genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.18.9e-102643041055
                  HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  r+RR++iN+++  L+ l+P+      +K++ +++Le Av+Y++ Lq
  DCAR_020074 264 RKRREKINERLRILQNLVPNG-----TKVDISTMLEDAVHYVQFLQ 304
                  9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.602254303IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.59E-14256320IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-12259316IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.5E-11260309IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.95E-11263308No hitNo description
PfamPF000104.4E-7264304IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MESVRVFQSE DFDFLNKMLV FDEEADPALQ FLPGYGTPAD LWPCTEANAN ANFAFFDESF  60
NTNFCFSQEN TNIGTYSNNY GACFPHLSQE TPQFCDSNLI MSDIPESMRF CEMDRPNNTP  120
QFFPGDHVMH DAVNLKVEMT NAELTDLGLK RKFEVPQQPE AVLNAENPKK KCRVPRDIST  180
CKKVVQAKRN RTVAQVVSID EDNTCNGPVA QSSSSYSSGD DSNTSQELNG GATSDSKGSV  240
ALNSGKKPRA GRGAATDPQS LYARKRREKI NERLRILQNL VPNGTKVDIS TMLEDAVHYV  300
QFLQLQIKLL SSDEMWMYAP IAHKGMDMGL YQNISPTL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1263268RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017258894.10.0PREDICTED: transcription factor bHLH85-like
TrEMBLA0A164X1890.0A0A164X189_DAUCS; Uncharacterized protein
STRINGEOY157462e-65(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA63922101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.13e-51bHLH family protein