PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_020118

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

C2H2

Protein Properties

Length: 142aa MW: 15632.3 Da PI: 7.4392

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_020118	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.2	2.9e-05	41	63	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F+++ L H++ H DCAR_020118 41 FPCNYCRRKFRSSQALGGHQNAH 63 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	5.42E-6	39	68	No hit	No description
Pfam	PF13912	1.8E-5	41	63	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	11.157	41	68	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	43	63	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 142 aa Download sequence Send to blast
MSINLNLPSD DELNLQLLLD TSSSSSSSYP CWNSIEPPRI FPCNYCRRKF RSSQALGGHQ 60 NAHKLERTLA KKSRELSSGV RARAERNKES GSGDSTSVQP HGMGMGMELV ERFSSGETTK 120 YKGDDNVYSD ESGQLDLSLR L*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of floral organ abscission. Participates in processes that directly or indirectly influence shedding of floral organs. {ECO:0000269\|PubMed:18192438}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017256765.1	1e-100	PREDICTED: zinc finger protein 2
Swissprot	Q39261	4e-21	ZFP2_ARATH; Zinc finger protein 2
TrEMBL	A0A161WVC8	3e-99	A0A161WVC8_DAUCS; Uncharacterized protein
STRING	XP_009614282.1	3e-29	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA8876	21	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57520.1	3e-21	zinc finger protein 2

Link Out ? help Back to Top
Phytozome	DCAR_020118