PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_020141

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

WRKY

Protein Properties

Length: 255aa MW: 28127.8 Da PI: 10.6172

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_020141	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	60.5	3.1e-19	191	250	2	59
--SS-EEEEEEE--TT-SS.-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsef.prsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D+y+W+KY K+++gs + +YY+C s gC+++k+v ++++d v+++tY+geHnh+ DCAR_020141 191 SDEYSWKKYDHKSITGSSLrSGGYYKCNSVtGCSARKHVIKDKNDSMVLIVTYKGEHNHR 250 69************98626689887**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	4.0E-21	183	252	IPR003657	WRKY domain
PROSITE profile	PS50811	21.195	185	252	IPR003657	WRKY domain
SuperFamily	SSF118290	1.57E-16	187	252	IPR003657	WRKY domain
SMART	SM00774	2.6E-17	190	251	IPR003657	WRKY domain
Pfam	PF03106	2.8E-16	192	250	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence Send to blast
MAVEVDVYRG MNNYINHSIR RTGHARFRRG PADQSTTSTS SYSHDDQAQQ KSFQFKLNAE 60 ECKSAKSSIS SEVLLIAGEE ATVSNGKLGA LIGGGAKRNY SSAKPPLPFS QRKISPNFSG 120 SSAVVPAMKS SYSSAKPPLP STHRKRRREI EQIFGDRLSS HGCHCCKRRK KIEITRRIRI 180 LKGSSSLSIP SDEYSWKKYD HKSITGSSLR SGGYYKCNSV TGCSARKHVI KDKNDSMVLI 240 VTYKGEHNHR SPGI*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	143	147	RKRRR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017257368.1	0.0	PREDICTED: probable WRKY transcription factor 17
TrEMBL	A0A164WZN3	0.0	A0A164WZN3_DAUCS; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24240.1	2e-22	WRKY DNA-binding protein 7

Link Out ? help Back to Top
Phytozome	DCAR_020141