PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_020170
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB_related
Protein Properties Length: 299aa    MW: 32559.4 Da    PI: 10.6491
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_020170genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.78.2e-1189133347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+ E+  ++ + ++lG+g+Wk I++    ++t+ q+ s+ qky
      DCAR_020170  89 PWTQSEHISFLIGLEKLGKGHWKGISKDYVPTKTPTQVASHAQKY 133
                      7**************************9999*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.88382138IPR017930Myb domain
SuperFamilySSF466893.67E-1583138IPR009057Homeodomain-like
TIGRFAMsTIGR015574.8E-1585136IPR006447Myb domain, plants
SMARTSM007177.4E-586136IPR001005SANT/Myb domain
CDDcd001674.31E-789134No hitNo description
Gene3DG3DSA:1.10.10.605.3E-789132IPR009057Homeodomain-like
PfamPF002492.2E-889133IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MDRGDNGSGK GGGGFKLFGV NINLQEDLYN TSPESSSKRK RIRKDCNRDL CNRGRQHHGI  60
ARDDPGYHSD NSLHVHSGRP ARVRNKAIPW TQSEHISFLI GLEKLGKGHW KGISKDYVPT  120
KTPTQVASHA QKYFIRISGV EKKRASPFDN MFSNSPPRLS TAASFNASEG SQQAMTTAVN  180
SSKKASRKRG LDGLSANIAA NKRIPPVSAT RANASDVCHI SNKTGDPGQS FAAALVTQQT  240
ELRPMLTDKF PSYIYDSSRH AIFPAQGLFR HPQPITNGTS QAQPATTVAE NSAILHHY*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017256757.10.0PREDICTED: uncharacterized protein LOC108226327
TrEMBLA0A164WYX90.0A0A164WYX9_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA117831823
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61620.14e-30MYB_related family protein