PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_020228
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family ERF
Protein Properties Length: 260aa    MW: 28791.5 Da    PI: 4.6709
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_020228genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.72.2e-1696146155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  + y+GVr +    +Wv+e+r+p++   ++r++lg+f tae+Aa+a++ a+ +l+g
  DCAR_020228  96 PVYRGVRSRN-PDKWVSEVREPNK---NTRIWLGTFPTAEMAARAHDVAAIALRG 146
                  68****9666.9******999843...6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.5E-1196146IPR001471AP2/ERF domain
PROSITE profilePS5103221.25997154IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-2997156IPR001471AP2/ERF domain
SMARTSM003806.5E-2797160IPR001471AP2/ERF domain
SuperFamilySSF541713.73E-2097156IPR016177DNA-binding domain
CDDcd000181.62E-2898156No hitNo description
PRINTSPR003671.2E-798109IPR001471AP2/ERF domain
PRINTSPR003671.2E-7120136IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MDHFFSYSTS SYSAPPQDPY NYSSYPTSSY SAPPQDPCHY SSYPDSSFPT ETTGNAYGIG  60
NASDQPVHIP GDEVLLASSN PKKRDGRKKF KETRHPVYRG VRSRNPDKWV SEVREPNKNT  120
RIWLGTFPTA EMAARAHDVA AIALRGRGAC LNFADSAWRL PVPASTNAKD IQKAAAEAAE  180
AFRPQENDNA AERTSPEETY ASQANEVAYM DEEALFATPE YINSMAQGMM LSPPQFAQSD  240
MYYGNDDMDS VTDMSLWNY*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid- and dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress, drought stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017255776.10.0PREDICTED: dehydration-responsive element-binding protein 1B-like
SwissprotQ9FJ935e-71DRE1D_ARATH; Dehydration-responsive element-binding protein 1D
TrEMBLA0A161WV040.0A0A161WV04_DAUCS; Uncharacterized protein
STRINGXP_008234474.14e-83(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA26324183
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25490.12e-70C-repeat/DRE binding factor 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guttikonda SK, et al.
    Overexpression of AtDREB1D transcription factor improves drought tolerance in soybean.
    Mol. Biol. Rep., 2014. 41(12): p. 7995-8008
    [PMID:25192890]
  3. Zhang T, et al.
    Overexpression of a NF-YB3 transcription factor from Picea wilsonii confers tolerance to salinity and drought stress in transformed Arabidopsis thaliana.
    Plant Physiol. Biochem., 2015. 94: p. 153-64
    [PMID:26093308]
  4. Carlow CE, et al.
    Nuclear localization and transactivation by Vitis CBF transcription factors are regulated by combinations of conserved amino acid domains.
    Plant Physiol. Biochem., 2017. 118: p. 306-319
    [PMID:28675818]
  5. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]