PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_020273
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family MYB_related
Protein Properties Length: 308aa    MW: 34105.4 Da    PI: 8.7906
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_020273genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding383.7e-123983147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     r +WT  E++++++a +++  + Wk+I + +g  +t  q++s+ qky
      DCAR_020273 39 RESWTDPEHDKFLEALHLFDRD-WKKIEAFIG-SKTVIQIRSHAQKY 83
                     789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.05E-153389IPR009057Homeodomain-like
PROSITE profilePS5129413.1833488IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.3E-63789IPR009057Homeodomain-like
TIGRFAMsTIGR015574.2E-173786IPR006447Myb domain, plants
SMARTSM007171.4E-93886IPR001005SANT/Myb domain
PfamPF002499.1E-103983IPR001005SANT/Myb domain
CDDcd001671.94E-74184No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MGMALPSIGG FNAQSGGLNP GPDDLSKKIR KPYTITKSRE SWTDPEHDKF LEALHLFDRD  60
WKKIEAFIGS KTVIQIRSHA QKYFMKVQKS GTNEHLPPPR PKRKASHPYP QKASKNAPVL  120
SQPKSAQTSS LPEAGFIRRP ESSPSVRNPA AGTTAVSSQT ENSMQTVGFT NMTKGDMISA  180
RQPMANNCCS STESAPRTHP TCEMNDQRNH GSSLRVLPDF AEVYSFIGSV FDPNTKGHLQ  240
KLKEMDPIDV ETVLLLMRNL SINLTSPKFE DHRKLLSSYQ IDVEKENTDD MVNNLLDDQA  300
DHSAQLG*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00625PBMTransfer from PK02532.1Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017254594.10.0PREDICTED: protein REVEILLE 6-like isoform X1
SwissprotQ8H0W31e-111RVE6_ARATH; Protein REVEILLE 6
TrEMBLA0A161ZW590.0A0A161ZW59_DAUCS; Uncharacterized protein
STRINGXP_010261344.11e-137(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9982478
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.11e-114MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]