PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_020355
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family HD-ZIP
Protein Properties Length: 225aa    MW: 26073.9 Da    PI: 4.7229
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_020355genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.98.3e-192273556
                 SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox  5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                  +f++eq++ Le+ F+ + ++  +++ +LA++l+L+ rqV +WFqNrRa++k
  DCAR_020355 22 KRFSDEQIRSLESIFKLDTKLEPKKKIQLARELELQPRQVAIWFQNRRARWK 73
                 68*************************************************9 PP
2HD-ZIP_I/II117.11e-3721111393
  HD-ZIP_I/II   3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                   +r+s+eq+++LE+ F+ ++kLep++K +lareL+lqprqva+WFqnrRAR+k+kqlE++y+aLk++yd+l+++ e L++e+e+L ++l++
  DCAR_020355  21 TKRFSDEQIRSLESIFKLDTKLEPKKKIQLARELELQPRQVAIWFQNRRARWKSKQLEQEYRALKTNYDNLNSQFEFLKEEKESLLAQLQK 111
                  69**************************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.98E-19877IPR009057Homeodomain-like
PROSITE profilePS5007117.751575IPR001356Homeobox domain
SMARTSM003891.9E-161579IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.1E-182182IPR009057Homeodomain-like
PfamPF000463.0E-162273IPR001356Homeobox domain
CDDcd000868.69E-152476No hitNo description
PROSITE patternPS0002705073IPR017970Homeobox, conserved site
PfamPF021831.5E-1375116IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MEEEDLSSSF SVQRKKKNKN TKRFSDEQIR SLESIFKLDT KLEPKKKIQL ARELELQPRQ  60
VAIWFQNRRA RWKSKQLEQE YRALKTNYDN LNSQFEFLKE EKESLLAQLQ KLNEMLKEIH  120
STNEASKGLE ERSTNQGLDD ENNNSEIKAD TKTLTDTVDN CSIMHSDPDE RENTGGLLDQ  180
YQGAELLSFC QQLDGPLPPA ERWCNFGSGD ISDQACGNSN WWEF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16775RRARWKSKQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00650PBMTransfer from LOC_Os09g35910Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017254682.11e-164PREDICTED: homeobox-leucine zipper protein ATHB-12-like
TrEMBLA0A161ZYH01e-163A0A161ZYH0_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20412363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61890.13e-37homeobox 12