PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_020448
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family ERF
Protein Properties Length: 227aa    MW: 24825.7 Da    PI: 5.1795
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_020448genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP243.67.1e-1433731154
          AP2 11 krgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54
                 ++g+WvAeIr p++   +kr++lg+++tae Aa+a++ a  +++
  DCAR_020448 33 RDGKWVAEIRIPKT---KKRIWLGSHDTAEAAAQAYDDASFCIY 73
                 57*********954...5********************988876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103217.6752282IPR001471AP2/ERF domain
SMARTSM003802.2E-242688IPR001471AP2/ERF domain
CDDcd000183.63E-242784No hitNo description
SuperFamilySSF541713.86E-152783IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.108.0E-212783IPR001471AP2/ERF domain
PfamPF008471.3E-73373IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MELPKKTDGS SSSTPQTAGA KRLRGPYRGA RLRDGKWVAE IRIPKTKKRI WLGSHDTAEA  60
AAQAYDDASF CIYGVEGPCN FPNNRRPQVA SQLIGSKSTE EIRRIVEQST SAGAAKVSDT  120
KSPSKLSAAC HLINRPVVQD QLDLSGTAAH KTCPEPVVTS NVSEVERHVT ELDFTGNASE  180
VEPYIPTFSP EEPPLPWENL PFDEAFIKES DDWILDFMAE PATQKD*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017255136.11e-168PREDICTED: ethylene-responsive transcription factor ERF015-like
RefseqXP_017255137.11e-168PREDICTED: ethylene-responsive transcription factor ERF015-like
RefseqXP_017255138.11e-168PREDICTED: ethylene-responsive transcription factor ERF015-like
RefseqXP_017255139.11e-168PREDICTED: ethylene-responsive transcription factor ERF015-like
TrEMBLA0A161WUB61e-167A0A161WUB6_DAUCS; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1877423
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31060.16e-16ERF family protein