PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_020569
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family bHLH
Protein Properties Length: 248aa    MW: 28050 Da    PI: 8.7656
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_020569genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH46.28e-1566118155
                  CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                  ++ +hn++Er RR+++Ns ++ Lr+llP      + kKls   ++ ++ +YI +Lq
  DCAR_020569  66 KKINHNANERDRRKKMNSLYSSLRSLLPAfH---QTKKLSIPNTVSRVLKYIPELQ 118
                  6789*************************77...9999***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.00565117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.86E-566122No hitNo description
SuperFamilySSF474594.97E-1566135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.9E-1266118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.7E-1267134IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.9E-1071123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010106Biological Processcellular response to iron ion starvation
GO:0055072Biological Processiron ion homeostasis
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MLSLSPPLFQ TFAWPIEDPM MNQEYNFYAH TDNIPNSILH LPSTLDAQPQ VGLGDSSAFE  60
PTAVVKKINH NANERDRRKK MNSLYSSLRS LLPAFHQTKK LSIPNTVSRV LKYIPELQNE  120
IERLVRKKEA LSVKISKQGE LFQYENQRNN SIRGSLATVS ASLIGDKQVT IQLSTFKANM  180
RLQSEALEVV EKDGFELVNA SFNSFGERAF YNLHLQVTFR NTLICVGSVY NCHCNKIATD  240
FITDSIY*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017257490.11e-160PREDICTED: transcription factor ORG2-like
TrEMBLA0A164WPF60.0A0A164WPF6_DAUCS; Uncharacterized protein
STRINGVIT_13s0047g00450.t011e-69(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22262256
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56970.18e-57bHLH family protein