PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_020616

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

bZIP

Protein Properties

Length: 345aa MW: 38589.5 Da PI: 8.4502

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_020616	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	45.9	1.3e-14	256	298	5	47
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkk 47 +r++r++kNRe+A rsR+RK+a++ eLe+kv+ Le+eN++L+ DCAR_020616 256 RRQKRMIKNRESAARSRARKQAYTHELENKVQRLEEENERLRR 298 79***************************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	8.6E-11	252	305	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.794	254	299	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	8.0E-14	256	299	No hit	No description
Pfam	PF00170	2.9E-12	256	298	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	3.75E-12	256	300	No hit	No description
CDD	cd14707	1.04E-24	256	301	No hit	No description
PROSITE pattern	PS00036	0	259	274	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009737	Biological Process	response to abscisic acid
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence Send to blast
MGSQGSYGSG GSREMQESGK DFLAQQNSLY NLTLDEVQSQ LGHLGKPLTS MNLDEFLKSV 60 WTVEANQGLG RVDYGASQNG LLASGSGLYR QSSVTLPRDL SKKTVDEVWK DIQQGQNKNS 120 TRMSNRERNS TFGEMTVEDF LVKAGVVTEG GKASGPVFGV EPVALPQQSS PQTPWLNYQI 180 PSTHQPTQQQ NMLSVFMPGN IVQPSLSLSS NTILDVYNET QMTISPSPLM GTLSDTQTPG 240 RKRNASGDVV EKTVERRQKR MIKNRESAAR SRARKQAYTH ELENKVQRLE EENERLRRQK 300 VIFSIVHCCM FSYCIFNKYF HLTSGVTFPY ICMCENFFML DNHV*

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence Send to blast

MGSQGSYGSG GSREMQESGK DFLAQQNSLY NLTLDEVQSQ LGHLGKPLTS MNLDEFLKSV  60
WTVEANQGLG RVDYGASQNG LLASGSGLYR QSSVTLPRDL SKKTVDEVWK DIQQGQNKNS  120
TRMSNRERNS TFGEMTVEDF LVKAGVVTEG GKASGPVFGV EPVALPQQSS PQTPWLNYQI  180
PSTHQPTQQQ NMLSVFMPGN IVQPSLSLSS NTILDVYNET QMTISPSPLM GTLSDTQTPG  240
RKRNASGDVV EKTVERRQKR MIKNRESAAR SRARKQAYTH ELENKVQRLE EENERLRRQK  300
VIFSIVHCCM FSYCIFNKYF HLTSGVTFPY ICMCENFFML DNHV*

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00409	DAP	Transfer from AT3G56850	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017254788.1	0.0	PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 2
Refseq	XP_017254789.1	0.0	PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 2
Swissprot	Q9LES3	5e-89	AI5L2_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 2
TrEMBL	A0A161YG90	0.0	A0A161YG90_DAUCS; Uncharacterized protein
STRING	PGSC0003DMT400072260	1e-118	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3334	24	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56850.1	4e-82	ABA-responsive element binding protein 3

Link Out ? help Back to Top
Phytozome	DCAR_020616

Publications ? help Back to Top
Kim H, et al. ABA-HYPERSENSITIVE BTB/POZ PROTEIN 1 functions as a negative regulator in ABA-mediated inhibition of germination in Arabidopsis. Plant Mol. Biol., 2016. 90(3): p. 303-15 [PMID:26667153] Song C,Kim T,Chung WS,Lim CO The Arabidopsis Phytocystatin AtCYS5 Enhances Seed Germination and Seedling Growth under Heat Stress Conditions. Mol. Cells, 2017. 40(8): p. 577-586 [PMID:28756655]