PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

DCAR_020646

Organism

Daucus carota

Taxonomic ID

4039

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus

Family

WOX

Protein Properties

Length: 254aa MW: 28152.8 Da PI: 6.0836

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
DCAR_020646	genome	ARS-USDA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	43	7.5e-14	22	82	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+++eql Le+ + + +p ++e +++ k l + +++V++WFqNrR + ++ DCAR_020646 22 RPRWTPKQEQLVMLESIYSSgVVNPPKDETTRIRKLLeeygPVVDSNVFYWFQNRRSRSRR 82 89***************99************99999**************997 PP
2	Wus_type_Homeobox	99.1	3.4e-32	21	83	2	64
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 +r+RWtP++eQ+ +Le++y+sG+++P+k+e++ri++ LeeyG + d NVfyWFQNr++R+r++ DCAR_020646 21 VRPRWTPKQEQLVMLESIYSSGVVNPPKDETTRIRKLLEEYGPVVDSNVFYWFQNRRSRSRRR 83 579**********************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	10.414	18	83	IPR001356	Homeobox domain
SMART	SM00389	3.3E-4	20	87	IPR001356	Homeobox domain
Pfam	PF00046	1.5E-11	22	82	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.14E-10	22	88	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	8.3E-7	22	88	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 254 aa Download sequence Send to blast
MEYRNDQIHQ GREGNGEAVS VRPRWTPKQE QLVMLESIYS SGVVNPPKDE TTRIRKLLEE 60 YGPVVDSNVF YWFQNRRSRS RRRTRQIQAK INREQAASHE SSGSTNAYEH QNSTSFTVPN 120 SGEQDFFSPV SSSCLGGGHF LSSSDPSLYG DNSSFYPTQV CYPGNERNSS DSTFHNTFSA 180 ETSNVHYQSG GLITVFINGV ATDVSMGPLD MKGMFGEQDL LLFHSSGVQV SNTCFSSSLQ 240 HGESYFLVPG ANQ*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017254926.1	0.0	PREDICTED: WUSCHEL-related homeobox 11
TrEMBL	A0A161YG67	0.0	A0A161YG67_DAUCS; Uncharacterized protein
STRING	XP_009609298.1	6e-54	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6166	22	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17810.2	1e-42	WUSCHEL related homeobox 12

Link Out ? help Back to Top
Phytozome	DCAR_020646