PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_020690
Organism
Daucus carota
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family NF-YA
Protein Properties Length: 332aa    MW: 36323.9 Da    PI: 9.5972
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_020690genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA99.14.4e-31168223258
    CBFB_NFYA   2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                   p++VNaKQy++I++RR++Rak+e ++kl +k+rkpylh SRh hA+rRpRg+gGrF
  DCAR_020690 168 GPVFVNAKQYHGIIRRRKSRAKAELQQKL-TKNRKPYLHLSRHLHAMRRPRGCGGRF 223
                  79***************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005214.7E-35165226IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115234.823166226IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006164.7E-22169191IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.7E-26169223IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860171191IPR018362CCAAT-binding factor, conserved site
PRINTSPR006164.7E-22200223IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MTTMHSVYFK EHEGVQDSIG HLSSASAPWW TGLGTQLPYA DTGSQLRSPS VDNNFNGDQY  60
TATKFGEQCM EQGSEKGNTS HFTIFPGSSL SGHSKSPANG PKLLPSQAAF SMQATSPDYH  120
GHFELGFVPP VISAKYPYGE QFYGVFSTYG PEITGRVMLP LNLTTDDGPV FVNAKQYHGI  180
IRRRKSRAKA ELQQKLTKNR KPYLHLSRHL HAMRRPRGCG GRFLNTKEKC KEGNNSKMTG  240
MGQLCQSTGS QSSDVLQSDS SLSPREAIHI RSNLSGSEAT SMFSMADLNN FPINNMQASI  300
LSLSSMMNTG HGIVMPSKWI AAADNCRNLK M*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_A2e-18167228264HAPB protein
4g92_A2e-18167228264HAPB protein
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017254764.10.0PREDICTED: nuclear transcription factor Y subunit A-10 isoform X1
RefseqXP_017254765.10.0PREDICTED: nuclear transcription factor Y subunit A-10 isoform X1
TrEMBLA0A164WLJ10.0A0A164WLJ1_DAUCS; Uncharacterized protein
STRINGVIT_08s0032g01190.t011e-120(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37062347
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05690.12e-54nuclear factor Y, subunit A2